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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | VPBB_A0930 | 1046273..1047406 [-], 1134 | 433660100 | Exonuclease SbcD | |
2 | VPBB_A0931 | 1047503..1048345 [-], 843 | 433660101 | transhydrogenase beta subunit | |
3 | VPBB_A0932 | 1048650..1050485 [-], 1836 | 433660102 | VgrG protein | TssI |
4 | VPBB_A0933 | 1050543..1051022 [-], 480 | 433660103 | Putative cytoplasmic protein USSDB7A | TssD |
5 | VPBB_A0934 | 1051228..1053795 [-], 2568 | 433660104 | ClpA/B-type chaperone | TssH |
6 | VPBB_A0935 | 1053806..1054771 [-], 966 | 433660105 | hypothetical protein | TssG |
7 | VPBB_A0936 | 1054768..1056591 [-], 1824 | 433660106 | Protein ImpG/VasA | TssF |
8 | VPBB_A0937 | 1056588..1057052 [-], 465 | 433660107 | Uncharacterized protein ImpF | TssE |
9 | VPBB_A0938 | 1057061..1057858 [-], 798 | 433660108 | Protein of avirulence locus ImpE | TagJ |
10 | VPBB_A0939 | 1057869..1059380 [-], 1512 | 433660109 | Uncharacterized protein ImpD | TssC |
11 | VPBB_A0940 | 1059436..1060929 [-], 1494 | 433660110 | Uncharacterized protein ImpC | TssC |
12 | VPBB_A0941 | 1060929..1061375 [-], 447 | 433660111 | Uncharacterized protein ImpB | TssB |
13 | VPBB_A0942 | 1061475..1062596 [-], 1122 | 433660112 | Uncharacterized protein ImpA | TssA |
14 | VPBB_A0943 | 1062593..1063381 [-], 789 | 433660113 | putative phosphoprotein phosphatase | |
15 | VPBB_A0944 | 1063392..1064087 [-], 696 | 433660114 | Protein phosphatase ImpM | |
16 | VPBB_A0945 | 1064069..1067599 [-], 3531 | 433660115 | IcmF-related protein | TssM |
17 | VPBB_A0946 | 1067603..1068895 [-], 1293 | 433660116 | Type VI secretion system family protein | TssL |
18 | VPBB_A0947 | 1068907..1070196 [-], 1290 | 433660117 | hypothetical protein | TssK |
19 | VPBB_A0948 | 1070254..1070709 [-], 456 | 433660118 | Type VI secretion protein | TssJ |
20 | VPBB_A0949 | 1070719..1071915 [-], 1197 | 433660119 | hypothetical protein | Fha |
21 | VPBB_A0950 | 1072238..1074385 [+], 2148 | 433660120 | protein kinase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein