I. Summary
SecReT6 ID721 insolico
StrainDesulfovibrio hydrothermalis AM13 = DSM 14728
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1DESAM_218742264008..2264100 [-], 93436841870hypothetical protein 
2DESAM_218752264220..2265932 [+], 1713436841871L-lactate transport 
3DESAM_218762266015..2266614 [-], 600436841872hypothetical protein 
4DESAM_218772266652..2266768 [-], 117436841873hypothetical protein 
5DESAM_218782266880..2268496 [+], 1617436841874Type VI secretion-associated protein, VC_A0119 family  TssA
6DESAM_218792268541..2269023 [+], 483436841875Type VI secretion protein, VC_A0107 family  TssB
7DESAM_218802269034..2270518 [+], 1485436841876Type VI secretion protein, EvpB/VC_A0108 family  TssC
8DESAM_21881 (hcpC)2270607..2271089 [+], 483436841877Major exported protein  TssD
9DESAM_218822271142..2271561 [+], 420436841878Type VI secretion system lysozyme-related protein  TssE
10DESAM_218832271565..2273295 [+], 1731436841879Type VI secretion protein, VC_A0110 family  TssF
11DESAM_218842273259..2274302 [+], 1044436841880Type VI secretion protein, VC_A0111 family  TssG
12DESAM_21885 (clpV)2274332..2276962 [+], 2631436841881Protein ClpV1  TssH
13DESAM_218862276988..2279264 [+], 2277436841882Rhs element Vgr protein  TssI
14DESAM_218872279277..2283113 [+], 3837436841883Pentapeptide repeat protein 
15DESAM_218882283110..2284174 [+], 1065436841884Pentapeptide repeat protein 
16DESAM_218892284197..2284820 [+], 624436841885hypothetical protein 
17DESAM_218902284950..2285354 [+], 405436841886hypothetical protein 
18DESAM_218912285369..2286142 [+], 774436841887hypothetical protein 
19DESAM_218922286205..2287752 [-], 1548436841888hypothetical protein  TssC
20DESAM_218932287951..2288529 [+], 579436841889Type VI secretion lipoprotein, VC_A0113 family  TssJ
21DESAM_218942288533..2289912 [+], 1380436841890Type VI secretion protein, VC_A0114 family  TssK
22DESAM_218952289919..2290662 [+], 744436841891Type IV / VI secretion system protein, DotU family  TssL
23DESAM_218962290697..2294209 [+], 3513436841892conserved membrane protein of unknown function  TssM
24DESAM_218972294237..2294962 [+], 726436841893conserved exported protein of unknown function 
25DESAM_218982295090..2297255 [-], 2166436841894Methyl-accepting chemotaxis sensory transducer with Cache sensor 
26DESAM_218992297572..2298654 [-], 1083436841895conserved exported protein of unknown function 
27DESAM_219002298674..2299927 [-], 1254436841896conserved exported protein of unknown function 
28DESAM_219012299851..2300117 [-], 267436841897hypothetical protein 
29DESAM_219022300065..2300202 [+], 138436841898hypothetical protein 
30DESAM_21903 (gatA)2300578..2302041 [-], 1464436841899glutamyl-tRNA(Gln) amidotransferase (subunit A) 
31DESAM_219042302010..2302126 [-], 117436841900hypothetical protein 
32DESAM_21905 (gatC)2302165..2302458 [-], 294436841901Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 
33DESAM_219062302507..2304651 [-], 2145436841902hypothetical protein 
34DESAM_21907 (dnaK)2304908..2306824 [-], 1917436841903Chaperone protein dnaK 
35DESAM_21908 (grpE)2306913..2307485 [-], 573436841904Protein grpE 
36DESAM_219092307633..2308841 [-], 1209436841905Peptidase M29 aminopeptidase II 
37DESAM_219102309150..2309386 [+], 237436841906FeoA family protein 
38DESAM_219112309387..2311570 [+], 2184436841907Ferrous iron transport protein B 
39DESAM_21912 (clpB)2311690..2314314 [-], 2625436841908protein disaggregation chaperone  TssH
40DESAM_219132314701..2315015 [-], 315436841909hypothetical protein 
41DESAM_21914 (cbpA)2315030..2316022 [-], 993436841910Curved DNA-binding protein 
42DESAM_219152316259..2316990 [-], 732436841911Rhomboid family protein 
43DESAM_219162317410..2319059 [-], 1650436841912Pseudouridine synthase, RluA family 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.