SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	722
Strain	Enterobacteriaceae bacterium strain FGI 57
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_020063
Location	3769960..3794919
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	2	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	D782_3627	3765145..3767238 [-], 2094	440288967	hypothetical protein
2	D782_3628	3767223..3767777 [-], 555	440288968	Protein of unknown function (DUF3304)
3	D782_3630	3768296..3768820 [-], 525	440288969	Protein of unknown function (DUF3304)
4	D782_3631	3769183..3769947 [-], 765	440288970	hypothetical protein
5	D782_3632	3769960..3772194 [-], 2235	440288971	Rhs element Vgr protein	TssI
6	D782_3633	3772410..3772928 [-], 519	440288972	type VI secretion system effector, Hcp1 family	TssD
7	D782_3634	3773631..3774131 [+], 501	440288973	type VI secretion protein, VC_A0107 family	TssB
8	D782_3635	3774152..3775633 [+], 1482	440288974	type VI secretion protein, EvpB/VC_A0108 family	TssC
9	D782_3636	3775636..3776064 [+], 429	440288975	type VI secretion system lysozyme-related protein	TssE
10	D782_3637	3776072..3777892 [+], 1821	440288976	type VI secretion protein, VC_A0110 family	TssF
11	D782_3638	3777859..3778902 [+], 1044	440288977	type VI secretion protein, VC_A0111 family	TssG
12	D782_3639	3778907..3780205 [+], 1299	440288978	type VI secretion system FHA domain protein	Fha
13	D782_3640	3780202..3780735 [+], 534	440288979	type VI secretion lipoprotein, VC_A0113 family	TssJ
14	D782_3641	3780738..3782081 [+], 1344	440288980	type VI secretion protein, VC_A0114 family	TssK
15	D782_3642	3782086..3782904 [+], 819	440288981	type IV / VI secretion system protein, DotU family	TssL
16	D782_3643	3782917..3785592 [+], 2676	440288982	type VI secretion ATPase, ClpV1 family	TssH
17	D782_3644	3785589..3786296 [+], 708	440288983	type VI secretion-associated protein, VC_A0118 family
18	D782_3645	3786302..3787711 [+], 1410	440288984	type VI secretion-associated protein, VC_A0119 family	TssA
19	D782_3646	3787730..3791251 [+], 3522	440288985	type VI secretion protein IcmF	TssM
20	D782_3647	3791386..3792294 [+], 909	440288986	hypothetical protein
21	D782_3648	3792307..3792828 [+], 522	440288987	Protein of unknown function (DUF1240)
22	D782_3650	3793109..3793588 [+], 480	440288988	type VI secretion system effector, Hcp1 family	TssD
23	D782_3651	3793585..3794919 [+], 1335	440288989	hypothetical protein	TssA
24	D782_3652	3795117..3795917 [-], 801	440288990	hypothetical protein
25	D782_3654	3796371..3797111 [-], 741	440288991	DNA polymerase III, epsilon subunit
26	D782_3655	3797166..3797633 [+], 468	440288992	ribonuclease HI
27	D782_3656	3797630..3798352 [-], 723	440288993	methylase involved in ubiquinone/menaquinone biosynthesis
28	D782_3657	3798385..3799140 [+], 756	440288994	hydroxyacylglutathione hydrolase

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

ABG57132

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	D782_3633	3772410..3772928 [-], 519	440288972	type VI secretion system effector, Hcp1 family	ABG57132

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Proteins Genes

N/A