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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | D782_3627 | 3765145..3767238 [-], 2094 | 440288967 | hypothetical protein | |
2 | D782_3628 | 3767223..3767777 [-], 555 | 440288968 | Protein of unknown function (DUF3304) | |
3 | D782_3630 | 3768296..3768820 [-], 525 | 440288969 | Protein of unknown function (DUF3304) | |
4 | D782_3631 | 3769183..3769947 [-], 765 | 440288970 | hypothetical protein | |
5 | D782_3632 | 3769960..3772194 [-], 2235 | 440288971 | Rhs element Vgr protein | TssI |
6 | D782_3633 | 3772410..3772928 [-], 519 | 440288972 | type VI secretion system effector, Hcp1 family | TssD |
7 | D782_3634 | 3773631..3774131 [+], 501 | 440288973 | type VI secretion protein, VC_A0107 family | TssB |
8 | D782_3635 | 3774152..3775633 [+], 1482 | 440288974 | type VI secretion protein, EvpB/VC_A0108 family | TssC |
9 | D782_3636 | 3775636..3776064 [+], 429 | 440288975 | type VI secretion system lysozyme-related protein | TssE |
10 | D782_3637 | 3776072..3777892 [+], 1821 | 440288976 | type VI secretion protein, VC_A0110 family | TssF |
11 | D782_3638 | 3777859..3778902 [+], 1044 | 440288977 | type VI secretion protein, VC_A0111 family | TssG |
12 | D782_3639 | 3778907..3780205 [+], 1299 | 440288978 | type VI secretion system FHA domain protein | Fha |
13 | D782_3640 | 3780202..3780735 [+], 534 | 440288979 | type VI secretion lipoprotein, VC_A0113 family | TssJ |
14 | D782_3641 | 3780738..3782081 [+], 1344 | 440288980 | type VI secretion protein, VC_A0114 family | TssK |
15 | D782_3642 | 3782086..3782904 [+], 819 | 440288981 | type IV / VI secretion system protein, DotU family | TssL |
16 | D782_3643 | 3782917..3785592 [+], 2676 | 440288982 | type VI secretion ATPase, ClpV1 family | TssH |
17 | D782_3644 | 3785589..3786296 [+], 708 | 440288983 | type VI secretion-associated protein, VC_A0118 family | |
18 | D782_3645 | 3786302..3787711 [+], 1410 | 440288984 | type VI secretion-associated protein, VC_A0119 family | TssA |
19 | D782_3646 | 3787730..3791251 [+], 3522 | 440288985 | type VI secretion protein IcmF | TssM |
20 | D782_3647 | 3791386..3792294 [+], 909 | 440288986 | hypothetical protein | |
21 | D782_3648 | 3792307..3792828 [+], 522 | 440288987 | Protein of unknown function (DUF1240) | |
22 | D782_3650 | 3793109..3793588 [+], 480 | 440288988 | type VI secretion system effector, Hcp1 family | TssD |
23 | D782_3651 | 3793585..3794919 [+], 1335 | 440288989 | hypothetical protein | TssA |
24 | D782_3652 | 3795117..3795917 [-], 801 | 440288990 | hypothetical protein | |
25 | D782_3654 | 3796371..3797111 [-], 741 | 440288991 | DNA polymerase III, epsilon subunit | |
26 | D782_3655 | 3797166..3797633 [+], 468 | 440288992 | ribonuclease HI | |
27 | D782_3656 | 3797630..3798352 [-], 723 | 440288993 | methylase involved in ubiquinone/menaquinone biosynthesis | |
28 | D782_3657 | 3798385..3799140 [+], 756 | 440288994 | hydroxyacylglutathione hydrolase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein