SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	723
Strain	Serratia marcescens FGI94
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_020064
Location	1749566..1796753
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	D781_1654	1745311..1745478 [+], 168	440230345	ribosome modulation factor
2	D781_1655	1745871..1746359 [+], 489	440230346	hypothetical protein
3	D781_1656	1746452..1746970 [-], 519	440230347	beta-hydroxyacyl-(acyl carrier protein) dehydratase FabA
4	D781_1657	1747039..1748808 [-], 1770	440230348	putative ATP-dependent protease
5	D781_1658	1748996..1749454 [+], 459	440230349	hypothetical protein
6	D781_1659	1749566..1750633 [-], 1068	440230350	outer membrane protein/peptidoglycan-associated (lipo)protein	TagL
7	D781_1660	1750995..1751507 [-], 513	440230351	SOS-response cell division inhibitor, blocks FtsZ ring formation
8	D781_1661	1751738..1752343 [+], 606	440230352	regulator of competence-specific genes
9	D781_1662	1752388..1754523 [-], 2136	440230353	putative membrane protein, TIGR01666
10	D781_1663	1754550..1755002 [-], 453	440230354	hypothetical protein
11	D781_1664	1755162..1757216 [+], 2055	440230355	DNA/RNA helicase, superfamily I
12	D781_1665	1757252..1757710 [-], 459	440230356	methylglyoxal synthase
13	D781_1666	1757839..1758393 [-], 555	440230357	hypothetical protein
14	D781_1667	1758446..1758538 [+], 93	440230358	hypothetical protein
15	D781_1668	1758686..1759099 [+], 414	440230359	putative CoA-binding protein
16	D781_1669	1759154..1759471 [-], 318	440230360	hemimethylated DNA binding domain protein
17	D781_1670	1759549..1760733 [-], 1185	440230361	putative SAM-dependent methyltransferase
18	D781_1671	1760978..1761256 [+], 279	440230362	acylphosphatase
19	D781_1672	1761268..1761597 [-], 330	440230363	sulfur relay protein, TusE/DsrC/DsvC family
20	D781_1673	1761773..1762858 [+], 1086	440230364	theronine dehydrogenase-like Zn-dependent dehydrogenase
21	D781_1674	1762929..1763585 [-], 657	440230365	FtsH-interacting integral membrane protein
22	D781_1676	1764726..1765223 [+], 498	440230366	type VI secretion protein, VC_A0107 family	TssB
23	D781_1677	1765257..1766804 [+], 1548	440230367	type VI secretion protein, EvpB/VC_A0108 family	TssC
24	D781_1678	1766817..1768157 [+], 1341	440230368	type VI secretion protein, VC_A0114 family	TssK
25	D781_1679	1768154..1768828 [+], 675	440230369	type IV / VI secretion system protein, DotU family	TssL
26	D781_1680	1768825..1770537 [+], 1713	440230370	outer membrane protein/peptidoglycan-associated (lipo)protein	TagL
27	D781_1681	1770539..1771030 [+], 492	440230371	type VI secretion system effector, Hcp1 family	TssD
28	D781_1682	1771304..1773943 [+], 2640	440230372	type VI secretion ATPase, ClpV1 family	TssH
29	D781_1683	1773946..1776324 [+], 2379	440230373	Rhs element Vgr protein	TssI
30	D781_1684	1776325..1777089 [+], 765	440230374	hypothetical protein
31	D781_1685	1777168..1777695 [+], 528	440230375	Protein of unknown function (DUF3304)
32	D781_1686	1777767..1778294 [+], 528	440230376	Protein of unknown function (DUF3304)
33	D781_1687	1778366..1778893 [+], 528	440230377	Protein of unknown function (DUF3304)
34	D781_1688	1778881..1781322 [+], 2442	440230378	hypothetical protein
35	D781_1689	1781336..1781593 [+], 258	440230379	hypothetical protein	PAAR
36	D781_1690	1781623..1782729 [+], 1107	440230380	hypothetical protein
37	D781_1691	1782713..1786132 [+], 3420	440230381	hypothetical protein	TssM
38	D781_1692	1787072..1788676 [+], 1605	440230382	type VI secretion-associated protein, VC_A0119 family	TssA
39	D781_1693	1788720..1790474 [+], 1755	440230383	type VI secretion protein, VC_A0110 family	TssF
40	D781_1694	1790438..1791523 [+], 1086	440230384	type VI secretion protein, VC_A0111 family	TssG
41	D781_1695	1791501..1792043 [+], 543	440230385	type VI secretion lipoprotein, VC_A0113 family	TssJ
42	D781_1696	1792113..1792799 [+], 687	440230386	phosphatidylglycerophosphate synthase
43	D781_1697	1792789..1793439 [+], 651	440230387	1-acyl-sn-glycerol-3-phosphate acyltransferase
44	D781_1698	1793436..1794371 [+], 936	440230388	putative CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
45	D781_1699	1794395..1794841 [+], 447	440230389	type VI secretion system lysozyme-related protein	TssE
46	D781_1701	1795383..1796753 [+], 1371	440230390	hypothetical protein	TssA
47	D781_1702	1796732..1797886 [-], 1155	440230391	2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase
48	D781_1703	1798234..1799616 [+], 1383	440230392	xanthine permease
49	D781_1704	1799594..1800094 [+], 501	440230393	OHCU decarboxylase
50	D781_1705	1800091..1800423 [+], 333	440230394	hydroxyisourate hydrolase

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	D781_1681	1770539..1771030 [+], 492	440230371	type VI secretion system effector, Hcp1 family	EC042_4529

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Proteins Genes

N/A