 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | D781_2766 | 2914804..2915019 [+], 216 | 440231409 | hemolysin expression modulating protein | |
2 | D781_2767 | 2915175..2915594 [+], 420 | 440231410 | universal stress family protein | |
3 | D781_2768 | 2915685..2916719 [+], 1035 | 440231411 | putative NADP-dependent oxidoreductase | |
4 | D781_2769 | 2917074..2917220 [+], 147 | 440231412 | hypothetical protein | |
5 | D781_2770 | 2918136..2918639 [+], 504 | 440231413 | hypothetical protein | |
6 | D781_2771 | 2918666..2919193 [+], 528 | 440231414 | type VI secretion lipoprotein, VC_A0113 family | TssJ |
7 | D781_2772 | 2919236..2920582 [+], 1347 | 440231415 | type VI secretion protein, VC_A0114 family | TssK |
8 | D781_2773 | 2920586..2921809 [+], 1224 | 440231416 | type VI secretion system OmpA/MotB family protein | TssL |
9 | D781_2774 | 2921809..2925453 [+], 3645 | 440231417 | type VI secretion protein IcmF | TssM |
10 | D781_2775 | 2925476..2926195 [+], 720 | 440231418 | type VI secretion-associated protein, BMA_A0400 family | |
11 | D781_2776 | 2926225..2927256 [+], 1032 | 440231419 | type VI secretion-associated protein, ImpA family | TssA |
12 | D781_2777 | 2927387..2927926 [+], 540 | 440231420 | type VI secretion protein, VC_A0107 family | TssB |
13 | D781_2778 | 2927930..2929435 [+], 1506 | 440231421 | type VI secretion protein, EvpB/VC_A0108 family | TssC |
14 | D781_2779 | 2929459..2929998 [+], 540 | 440231422 | hypothetical protein | |
15 | D781_2780 | 2929995..2930438 [+], 444 | 440231423 | hypothetical protein | Rap1b (i) |
16 | D781_2781 | 2930631..2931113 [+], 483 | 440231424 | type VI secretion system effector, Hcp1 family | TssD |
17 | D781_2782 | 2931167..2931670 [+], 504 | 440231425 | hypothetical protein | |
18 | D781_2783 | 2931667..2932098 [+], 432 | 440231426 | hypothetical protein | |
19 | D781_2784 | 2932112..2932924 [+], 813 | 440231427 | hypothetical protein | |
20 | D781_2785 | 2932954..2933331 [+], 378 | 440231428 | hypothetical protein | |
21 | D781_2786 | 2933396..2933776 [+], 381 | 440231429 | hypothetical protein | |
22 | D781_2787 | 2933835..2934602 [+], 768 | 440231430 | hypothetical protein | |
23 | D781_2788 | 2934963..2935319 [+], 357 | 440231431 | hypothetical protein | |
24 | D781_2789 | 2935395..2937281 [+], 1887 | 440231432 | FHA domain protein | Fha |
25 | D781_2790 | 2937281..2938054 [+], 774 | 440231433 | serine/threonine protein phosphatase | |
26 | D781_2791 | 2938081..2939076 [+], 996 | 440231434 | hypothetical protein | |
27 | D781_2792 | 2939092..2939913 [+], 822 | 440231435 | protein of avirulence locus involved in temperature-dependent protein secretion | TagJ |
28 | D781_2793 | 2939915..2940493 [+], 579 | 440231436 | hypothetical protein | TssE |
29 | D781_2794 | 2940498..2942384 [+], 1887 | 440231437 | type VI secretion protein, VC_A0110 family | TssF |
30 | D781_2795 | 2942381..2943451 [+], 1071 | 440231438 | type VI secretion protein, VC_A0111 family | TssG |
31 | D781_2796 | 2943535..2946252 [+], 2718 | 440231439 | type VI secretion ATPase, ClpV1 family | TssH |
32 | D781_2797 | 2946299..2947732 [+], 1434 | 440231440 | serine/threonine protein kinase | |
33 | D781_2798 | 2947838..2950423 [+], 2586 | 440231441 | Rhs element Vgr protein | TssI |
34 | D781_2799 | 2950427..2951179 [+], 753 | 440231442 | hypothetical protein | |
35 | D781_2800 | 2951336..2951602 [+], 267 | 440231443 | hypothetical protein | |
36 | D781_2801 | 2951857..2952198 [-], 342 | 440231444 | hypothetical protein | |
37 | D781_2802 | 2952270..2952602 [+], 333 | 440231445 | hypothetical protein | |
38 | D781_2803 | 2952893..2954830 [+], 1938 | 440231446 | Rhs element Vgr protein | TssI |
39 | D781_2804 | 2954827..2955264 [+], 438 | 440231447 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein