I. Summary

SecReT6 ID	724
Strain	Serratia marcescens FGI94
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_020064
Location	2918666..2954830
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

14

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	D781_2766	2914804..2915019 [+], 216	440231409	hemolysin expression modulating protein
2	D781_2767	2915175..2915594 [+], 420	440231410	universal stress family protein
3	D781_2768	2915685..2916719 [+], 1035	440231411	putative NADP-dependent oxidoreductase
4	D781_2769	2917074..2917220 [+], 147	440231412	hypothetical protein
5	D781_2770	2918136..2918639 [+], 504	440231413	hypothetical protein
6	D781_2771	2918666..2919193 [+], 528	440231414	type VI secretion lipoprotein, VC_A0113 family	TssJ
7	D781_2772	2919236..2920582 [+], 1347	440231415	type VI secretion protein, VC_A0114 family	TssK
8	D781_2773	2920586..2921809 [+], 1224	440231416	type VI secretion system OmpA/MotB family protein	TssL
9	D781_2774	2921809..2925453 [+], 3645	440231417	type VI secretion protein IcmF	TssM
10	D781_2775	2925476..2926195 [+], 720	440231418	type VI secretion-associated protein, BMA_A0400 family
11	D781_2776	2926225..2927256 [+], 1032	440231419	type VI secretion-associated protein, ImpA family	TssA
12	D781_2777	2927387..2927926 [+], 540	440231420	type VI secretion protein, VC_A0107 family	TssB
13	D781_2778	2927930..2929435 [+], 1506	440231421	type VI secretion protein, EvpB/VC_A0108 family	TssC
14	D781_2779	2929459..2929998 [+], 540	440231422	hypothetical protein
15	D781_2780	2929995..2930438 [+], 444	440231423	hypothetical protein	Rap1b (i)
16	D781_2781	2930631..2931113 [+], 483	440231424	type VI secretion system effector, Hcp1 family	TssD
17	D781_2782	2931167..2931670 [+], 504	440231425	hypothetical protein
18	D781_2783	2931667..2932098 [+], 432	440231426	hypothetical protein
19	D781_2784	2932112..2932924 [+], 813	440231427	hypothetical protein
20	D781_2785	2932954..2933331 [+], 378	440231428	hypothetical protein
21	D781_2786	2933396..2933776 [+], 381	440231429	hypothetical protein
22	D781_2787	2933835..2934602 [+], 768	440231430	hypothetical protein
23	D781_2788	2934963..2935319 [+], 357	440231431	hypothetical protein
24	D781_2789	2935395..2937281 [+], 1887	440231432	FHA domain protein	Fha
25	D781_2790	2937281..2938054 [+], 774	440231433	serine/threonine protein phosphatase
26	D781_2791	2938081..2939076 [+], 996	440231434	hypothetical protein
27	D781_2792	2939092..2939913 [+], 822	440231435	protein of avirulence locus involved in temperature-dependent protein secretion	TagJ
28	D781_2793	2939915..2940493 [+], 579	440231436	hypothetical protein	TssE
29	D781_2794	2940498..2942384 [+], 1887	440231437	type VI secretion protein, VC_A0110 family	TssF
30	D781_2795	2942381..2943451 [+], 1071	440231438	type VI secretion protein, VC_A0111 family	TssG
31	D781_2796	2943535..2946252 [+], 2718	440231439	type VI secretion ATPase, ClpV1 family	TssH
32	D781_2797	2946299..2947732 [+], 1434	440231440	serine/threonine protein kinase
33	D781_2798	2947838..2950423 [+], 2586	440231441	Rhs element Vgr protein	TssI
34	D781_2799	2950427..2951179 [+], 753	440231442	hypothetical protein
35	D781_2800	2951336..2951602 [+], 267	440231443	hypothetical protein
36	D781_2801	2951857..2952198 [-], 342	440231444	hypothetical protein
37	D781_2802	2952270..2952602 [+], 333	440231445	hypothetical protein
38	D781_2803	2952893..2954830 [+], 1938	440231446	Rhs element Vgr protein	TssI
39	D781_2804	2954827..2955264 [+], 438	440231447	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

SMA2263

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	D781_2781	2930631..2931113 [+], 483	440231424	type VI secretion system effector, Hcp1 family	SMA2263

Download FASTA format files

Proteins        Genes

Homology Immunity protein list

SMA2262

Immunity protein identified
#	Locus tag(Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	D781_2780	2929995..2930438 [+], 444	440231423	hypothetical protein	SMA2262

Download FASTA format files

Proteins        Genes

N/A