I. Summary

SecReT6 ID	728
Strain	Pseudomonas poae RE*1-1-14
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_020209
Location	1471988..1488575
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	H045_06760	1467921..1468415 [-], 495	447916352	hypothetical protein
2	H045_06765	1468522..1469343 [+], 822	447916353	putative aldo/keto reductase
3	H045_06770	1469411..1469926 [-], 516	447916354	hypothetical protein	TssD
4	H045_06775	1470483..1471952 [+], 1470	447916355	hypothetical protein	TssA
5	H045_06780	1471988..1472485 [+], 498	447916356	hypothetical protein	TssB
6	H045_06785	1472511..1473986 [+], 1476	447916357	type VI secretion protein TssC2	TssC
7	H045_06790	1474001..1474402 [+], 402	447916358	GPW/gp25 family protein	TssE
8	H045_06795	1474392..1476179 [+], 1788	447916359	type VI secretion protein TssF2	TssF
9	H045_06800	1476143..1477150 [+], 1008	447916360	type VI secretion protein TssG2	TssG
10	H045_06805	1477163..1479601 [+], 2439	447916361	ClpA/B-type protease	TssH
11	H045_06810	1479598..1481118 [+], 1521	447916362	sigma-54 dependent transcriptional regulator, Fis family protein	Sfa2
12	H045_06815	1481187..1481330 [+], 144	447916363	type VI secretion-associated lipoprotein TagU
13	H045_06820	1481333..1482505 [+], 1173	447916364	type VI secretion protein Fha2	Fha
14	H045_06825	1482535..1482996 [+], 462	447916365	type VI secretion lipoprotein TssJ2	TssJ
15	H045_06830	1482998..1484326 [+], 1329	447916366	type VI secretion protein TssK2	TssK
16	H045_06835	1484332..1485198 [+], 867	447916367	putative outer membrane protein	TssL
17	H045_06840	1485243..1488575 [+], 3333	447916368	type VI secretion protein IcmF	TssM
18	H045_06845	1488572..1489291 [+], 720	447916369	serine/threonine phosphoprotein phosphatase Stp1	Stp1
19	H045_06850	1489288..1490124 [+], 837	447916370	serine-threonine kinase Stk1	Stk1
20	H045_06855	1490132..1490461 [-], 330	447916371	hypothetical protein
21	H045_06860	1490484..1490738 [-], 255	447916372	hypothetical protein
22	H045_06865	1490892..1492502 [-], 1611	447916373	ABC transporter ATP-binding protein
23	H045_06870	1492504..1493523 [-], 1020	447916374	putative oligopeptide ABC transporter membrane protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

PSPTO_5435

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	H045_06770	1469411..1469926 [-], 516	447916354	hypothetical protein	PSPTO_5435

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Proteins        Genes

N/A

N/A