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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SMWW4_v1c31390 | 3383353..3384222 [-], 870 | 448242899 | hypothetical protein | |
2 | SMWW4_v1c31400 | 3384331..3384906 [-], 576 | 448242900 | hypothetical protein | |
3 | SMWW4_v1c31410 | 3385613..3385903 [-], 291 | 448242901 | hypothetical protein | |
4 | SMWW4_v1c31420 | 3386149..3386376 [+], 228 | 448242902 | hypothetical protein | |
5 | SMWW4_v1c31430 | 3386461..3386574 [-], 114 | 448242903 | hypothetical protein | |
6 | SMWW4_v1c31440 | 3386642..3386995 [-], 354 | 448242904 | hypothetical protein | |
7 | SMWW4_v1c31450 | 3387021..3390500 [-], 3480 | 448242905 | type VI secretion protein IcmF | TssM |
8 | SMWW4_v1c31460 | 3390536..3392047 [-], 1512 | 448242906 | hypothetical protein | TssL |
9 | SMWW4_v1c31470 | 3392044..3393402 [-], 1359 | 448242907 | hypothetical protein | TssK |
10 | SMWW4_v1c31480 | 3393404..3393910 [-], 507 | 448242908 | hypothetical protein | TssJ |
11 | SMWW4_v1c31490 | 3393920..3394285 [-], 366 | 448242909 | hypothetical protein | PAAR |
12 | SMWW4_v1c31500 | 3394292..3394906 [-], 615 | 448242910 | hypothetical protein | |
13 | SMWW4_v1c31510 | 3394899..3396053 [-], 1155 | 448242911 | hypothetical protein | |
14 | SMWW4_v1c31520 | 3396043..3398268 [-], 2226 | 448242912 | hypothetical protein | |
15 | SMWW4_v1c31530 | 3398281..3400542 [-], 2262 | 448242913 | hypothetical protein | TssI |
16 | SMWW4_v1c31540 (clpV) | 3400607..3403192 [-], 2586 | 448242914 | type VI secretion ATPase, ClpV family | TssH |
17 | SMWW4_v1c31550 (tssG) | 3403209..3404237 [-], 1029 | 448242915 | type VI secretion protein, TssG family | TssG |
18 | SMWW4_v1c31560 (tssF) | 3404230..3406071 [-], 1842 | 448242916 | type VI secretion protein, TssF family | TssF |
19 | SMWW4_v1c31570 | 3406083..3406529 [-], 447 | 448242917 | hypothetical protein | TssE |
20 | SMWW4_v1c31580 | 3406611..3407135 [-], 525 | 448242918 | hypothetical protein | TssD |
21 | SMWW4_v1c31590 | 3407367..3408893 [-], 1527 | 448242919 | hypothetical protein | TssC |
22 | SMWW4_v1c31600 (tssB) | 3408890..3409447 [-], 558 | 448242920 | type VI secretion protein, TssB family | TssB |
23 | SMWW4_v1c31610 | 3409472..3410437 [-], 966 | 448242921 | ImpA domain protein | TssA |
24 | SMWW4_v1c31620 | 3411474..3411665 [+], 192 | 448242922 | hypothetical protein | |
25 | SMWW4_v1c31630 | 3412047..3412481 [+], 435 | 448242923 | hypothetical protein | |
26 | SMWW4_v1c31640 | 3412539..3413171 [-], 633 | 448242924 | hypothetical protein | |
27 | SMWW4_v1c31650 | 3413291..3413761 [-], 471 | 448242925 | hypothetical protein | |
28 | SMWW4_v1c31660 | 3413751..3415238 [-], 1488 | 448242926 | putative 3-polyprenyl-4-hydroxybenzoate decarboxylase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein