SecReT6
I. Summary
SecReT6 ID732 insolico
StrainCronobacter sakazakii Sp291
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020260
Location2711736..2723639
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number000110011
ComponentTssGTssJTssKTssM
Number1000
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1CSSP291_128852707075..2707788 [-], 714449309093hypothetical protein 
2CSSP291_128902707971..2709086 [+], 1116449309094gamma-glutamyl:cysteine ligase 
3CSSP291_128952709351..2711258 [+], 1908449309095hypothetical protein 
4CSSP291_129002711736..2712218 [-], 483449309096hypothetical protein  TssE
5CSSP291_129052712228..2713025 [-], 798449309097hypothetical protein  TagJ
6CSSP291_129102713043..2713831 [-], 789449309098hypothetical protein  Fha
7CSSP291_129152713837..2714097 [-], 261449309099hypothetical protein  PAAR
8CSSP291_129202714153..2715904 [-], 1752449309100hypothetical protein  TssI
9CSSP291_129252715956..2716945 [+], 990449309101type VI secretion protein  TssF
10CSSP291_129302716945..2717973 [+], 1029449309102type VI secretion protein  TssG
11CSSP291_129352718028..2719074 [+], 1047449309103ImpA family protein  TssA
12CSSP291_129402719079..2720074 [+], 996449309104fimbrial protein 
13CSSP291_129452720086..2721423 [+], 1338449309105hypothetical protein 
14CSSP291_129502721417..2722016 [+], 600449309106hypothetical protein 
15CSSP291_129552722305..2722511 [-], 207449309107hypothetical protein 
16CSSP291_129602722653..2723639 [+], 987449309108OmpA/MotB family protein 2  TagL
17CSSP291_129652723632..2724117 [+], 486449309109hypothetical protein 
18CSSP291_129702724181..2725134 [-], 954449309110MarR family transcriptional regulator with acetyltransferase activity 
19CSSP291_129752725201..2725737 [-], 537449309111Inner membrane protein YgaP 
20CSSP291_129802725739..2726044 [-], 306449309112ArsR family transcriptional regulator 
21CSSP291_129852726280..2727443 [+], 1164449309113major facilitator superfamily protein 
22CSSP291_129902727510..2727863 [+], 354449309114hypothetical protein 
23CSSP291_129952727868..2728347 [-], 480449309115RES domain-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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