I. Summary

SecReT6 ID	732
Strain	Cronobacter sakazakii Sp291
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_020260
Location	2711736..2723639
Comment
Function	N/A
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	0	1	1	0	0	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	0	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	CSSP291_12885	2707075..2707788 [-], 714	449309093	hypothetical protein
2	CSSP291_12890	2707971..2709086 [+], 1116	449309094	gamma-glutamyl:cysteine ligase
3	CSSP291_12895	2709351..2711258 [+], 1908	449309095	hypothetical protein
4	CSSP291_12900	2711736..2712218 [-], 483	449309096	hypothetical protein	TssE
5	CSSP291_12905	2712228..2713025 [-], 798	449309097	hypothetical protein	TagJ
6	CSSP291_12910	2713043..2713831 [-], 789	449309098	hypothetical protein	Fha
7	CSSP291_12915	2713837..2714097 [-], 261	449309099	hypothetical protein	PAAR
8	CSSP291_12920	2714153..2715904 [-], 1752	449309100	hypothetical protein	TssI
9	CSSP291_12925	2715956..2716945 [+], 990	449309101	type VI secretion protein	TssF
10	CSSP291_12930	2716945..2717973 [+], 1029	449309102	type VI secretion protein	TssG
11	CSSP291_12935	2718028..2719074 [+], 1047	449309103	ImpA family protein	TssA
12	CSSP291_12940	2719079..2720074 [+], 996	449309104	fimbrial protein
13	CSSP291_12945	2720086..2721423 [+], 1338	449309105	hypothetical protein
14	CSSP291_12950	2721417..2722016 [+], 600	449309106	hypothetical protein
15	CSSP291_12955	2722305..2722511 [-], 207	449309107	hypothetical protein
16	CSSP291_12960	2722653..2723639 [+], 987	449309108	OmpA/MotB family protein 2	TagL
17	CSSP291_12965	2723632..2724117 [+], 486	449309109	hypothetical protein
18	CSSP291_12970	2724181..2725134 [-], 954	449309110	MarR family transcriptional regulator with acetyltransferase activity
19	CSSP291_12975	2725201..2725737 [-], 537	449309111	Inner membrane protein YgaP
20	CSSP291_12980	2725739..2726044 [-], 306	449309112	ArsR family transcriptional regulator
21	CSSP291_12985	2726280..2727443 [+], 1164	449309113	major facilitator superfamily protein
22	CSSP291_12990	2727510..2727863 [+], 354	449309114	hypothetical protein
23	CSSP291_12995	2727868..2728347 [-], 480	449309115	RES domain-containing protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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