SecReT6
I. Summary
SecReT6 ID734 insolico
StrainCronobacter sakazakii Sp291
Repliconplasmid pSP291-1 [Browse all T6SS(s) in this replicon]
AccessionNC_020263
Location43539..56505
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number010000100
ComponentTssGTssJTssKTssM
Number1110
5
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1CSSP291_2072338633..39352 [-], 720449306472hypothetical protein 
2CSSP291_2072839548..39841 [-], 294449306473hypothetical protein 
3CSSP291_2073339980..40327 [+], 348449306474hypothetical protein 
4CSSP291_2073840564..42054 [+], 1491449306475hypothetical protein 
5CSSP291_2074342138..42953 [-], 816449306476hypothetical protein 
6CSSP291_2074843539..44021 [+], 483449306477hypothetical protein  TssD
7CSSP291_2075344040..44978 [+], 939449306478hypothetical protein 
8CSSP291_2075845484..46872 [+], 1389449306479hypothetical protein 
9CSSP291_2076346934..47338 [-], 405449306480hypothetical protein 
10CSSP291_2076847382..48665 [-], 1284449306481arsenical pump membrane protein 
11CSSP291_2077348753..49085 [-], 333449306482hypothetical protein 
12CSSP291_2077849178..50065 [-], 888449306483hypothetical protein 
13CSSP291_2078350090..50968 [-], 879449306484hypothetical protein 
14CSSP291_2078851060..52394 [+], 1335449306485hypothetical protein 
15CSSP291_2080353614..55155 [+], 1542449306486hypothetical protein  TssC
16CSSP291_2080855166..55603 [+], 438449306487hypothetical protein  TssK
17CSSP291_2081355587..55997 [+], 411449306488hypothetical protein  TssG
18CSSP291_2081855978..56505 [+], 528449306489hypothetical protein  TssJ
19CSSP291_2082356539..57288 [-], 750449306490hypothetical protein 
20CSSP291_2082857285..59306 [-], 2022449306491hypothetical protein 
21CSSP291_2083359353..59742 [-], 390449306492hypothetical protein 
22CSSP291_2083859856..60116 [-], 261449306493hypothetical protein 
23CSSP291_2084360444..60689 [+], 246449306494hypothetical protein 
24CSSP291_2084861006..61455 [+], 450449306495hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1CSSP291_2074843539..44021 [+], 483449306477hypothetical protein SMA2263

Download FASTA format files
Proteins        Genes
N/A
N/A