SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	735
Strain	Desulfocapsa sulfexigens DSM 10523
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_020304
Location	2996794..3025122
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	UWK_02685	2992015..2993664 [-], 1650	451948279	serine/threonine protein kinase
2	UWK_02686	2993661..2994602 [-], 942	451948280	hypothetical protein
3	UWK_02687	2994599..2995339 [-], 741	451948281	serine/threonine protein phosphatase
4	UWK_02688	2995497..2995697 [+], 201	451948282	hypothetical protein
5	UWK_02689	2995681..2996703 [+], 1023	451948283	FHA domain-containing protein	Fha
6	UWK_02690	2996794..2998362 [+], 1569	451948284	hypothetical protein	TssC
7	UWK_02691	2998408..2999175 [-], 768	451948285	hypothetical protein
8	UWK_02692	2999201..2999980 [-], 780	451948286	hypothetical protein
9	UWK_02693	2999988..3001454 [-], 1467	451948287	FHA domain-containing protein	Fha
10	UWK_02694	3001464..3001871 [-], 408	451948288	hypothetical protein
11	UWK_02695	3001884..3002534 [-], 651	451948289	Protein of unknown function (DUF3540)
12	UWK_02696	3002564..3003619 [-], 1056	451948290	putative low-complexity protein
13	UWK_02697	3003630..3006197 [-], 2568	451948291	pentapeptide repeat protein
14	UWK_02698	3006204..3008492 [-], 2289	451948292	Rhs element Vgr protein	TssI
15	UWK_02699	3008492..3011143 [-], 2652	451948293	type VI secretion ATPase, ClpV1 family	TssH
16	UWK_02700	3011180..3012208 [-], 1029	451948294	type VI secretion protein, VC_A0111 family	TssG
17	UWK_02701	3012172..3013905 [-], 1734	451948295	type VI secretion protein, VC_A0110 family	TssF
18	UWK_02702	3013920..3014333 [-], 414	451948296	type VI secretion system lysozyme-related protein	TssE
19	UWK_02703	3014384..3014872 [-], 489	451948297	type VI secretion system effector, Hcp1 family	TssD
20	UWK_02704	3014955..3016442 [-], 1488	451948298	type VI secretion protein, EvpB/VC_A0108 family	TssC
21	UWK_02705	3016452..3016940 [-], 489	451948299	type VI secretion protein, VC_A0107 family	TssB
22	UWK_02706	3017105..3018685 [-], 1581	451948300	type VI secretion-associated protein, VC_A0119 family	TssA
23	UWK_02707	3018704..3022519 [-], 3816	451948301	hypothetical protein	TssM
24	UWK_02708	3022519..3023193 [-], 675	451948302	type IV / VI secretion system protein, DotU family	TssL
25	UWK_02709	3023196..3024581 [-], 1386	451948303	type VI secretion protein, VC_A0114 family	TssK
26	UWK_02710	3024592..3025122 [-], 531	451948304	type VI secretion lipoprotein, VC_A0113 family	TssJ
27	UWK_02711	3025127..3025864 [-], 738	451948305	hypothetical protein
28	UWK_02712	3025861..3027135 [-], 1275	451948306	hypothetical protein
29	UWK_02713	3027302..3028573 [-], 1272	451948307	ABC-type antimicrobial peptide transport system, permease component
30	UWK_02714	3028557..3029243 [-], 687	451948308	ABC-type antimicrobial peptide transport system, ATPase component

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A