I. Summary

SecReT6 ID	737
Strain	Helicobacter cinaedi ATCC BAA-847
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_020555
Location	1532730..1540916
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	1	0	0	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	HCBAA847_1589	1527880..1529709 [-], 1830	471316095	hypothetical protein
2	HCBAA847_1590	1529706..1530344 [-], 639	471316096	hypothetical protein
3	HCBAA847_1591	1530341..1530775 [-], 435	471316097	small methyltransferase
4	HCBAA847_1592	1530772..1531389 [-], 618	471316098	hypothetical protein
5	HCBAA847_1593	1531409..1531747 [-], 339	471316099	hypothetical protein
6	HCBAA847_1594	1531831..1532733 [-], 903	471316100	hypothetical protein	TssG
7	HCBAA847_1595	1532730..1534454 [-], 1725	471316101	VC_A0110 family type VI secretion protein	TssF
8	HCBAA847_1596	1534454..1534846 [-], 393	471316102	hypothetical protein	TssE
9	HCBAA847_1597 (evpB)	1534849..1536303 [-], 1455	471316103	VC_A0108 family type VI secretion protein	TssC
10	HCBAA847_1598	1536312..1536797 [-], 486	471316104	VC_A0107 family type VI secretion protein	TssB
11	HCBAA847_1599	1536860..1538107 [-], 1248	471316105	hypothetical protein
12	HCBAA847_1600	1538267..1538722 [+], 456	471316106	type VI secretion lipoprotein	TssJ
13	HCBAA847_1601	1538739..1540139 [+], 1401	471316107	VC_A0114 family type VI secretion protein	TssK
14	HCBAA847_1602	1540149..1540916 [+], 768	471316108	type IV / VI secretion system protein	TssL
15	HCBAA847_1603	1541430..1541873 [-], 444	471316109	hypothetical protein
16	HCBAA847_1604	1541972..1542232 [-], 261	471316110	hypothetical protein
17	HCBAA847_1605	1542216..1542785 [-], 570	471316111	hypothetical protein
18	HCBAA847_1606	1542816..1543187 [-], 372	471316112	hypothetical protein
19	HCBAA847_1607	1543202..1543567 [-], 366	471316113	hypothetical protein
20	HCBAA847_1608	1543564..1543764 [-], 201	471316114	hypothetical protein
21	HCBAA847_1609	1543683..1544123 [-], 441	471316115	truncated putative transcriptional regulator
22	HCBAA847_1610	1544135..1544842 [-], 708	471316116	putative transcriptional regulator

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

HH0243

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	HCBAA847_1435(hcp)	1384826..1385341 [+], 516	471315941	secreted protein	HH0243

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Proteins        Genes

N/A

N/A