SecReT6
I. Summary
SecReT6 ID737 insolico
StrainHelicobacter cinaedi ATCC BAA-847
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020555
Location1532730..1540916
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001001111
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1HCBAA847_15891527880..1529709 [-], 1830471316095hypothetical protein 
2HCBAA847_15901529706..1530344 [-], 639471316096hypothetical protein 
3HCBAA847_15911530341..1530775 [-], 435471316097small methyltransferase 
4HCBAA847_15921530772..1531389 [-], 618471316098hypothetical protein 
5HCBAA847_15931531409..1531747 [-], 339471316099hypothetical protein 
6HCBAA847_15941531831..1532733 [-], 903471316100hypothetical protein  TssG
7HCBAA847_15951532730..1534454 [-], 1725471316101VC_A0110 family type VI secretion protein  TssF
8HCBAA847_15961534454..1534846 [-], 393471316102hypothetical protein  TssE
9HCBAA847_1597 (evpB)1534849..1536303 [-], 1455471316103VC_A0108 family type VI secretion protein  TssC
10HCBAA847_15981536312..1536797 [-], 486471316104VC_A0107 family type VI secretion protein  TssB
11HCBAA847_15991536860..1538107 [-], 1248471316105hypothetical protein 
12HCBAA847_16001538267..1538722 [+], 456471316106type VI secretion lipoprotein  TssJ
13HCBAA847_16011538739..1540139 [+], 1401471316107VC_A0114 family type VI secretion protein  TssK
14HCBAA847_16021540149..1540916 [+], 768471316108type IV / VI secretion system protein  TssL
15HCBAA847_16031541430..1541873 [-], 444471316109hypothetical protein 
16HCBAA847_16041541972..1542232 [-], 261471316110hypothetical protein 
17HCBAA847_16051542216..1542785 [-], 570471316111hypothetical protein 
18HCBAA847_16061542816..1543187 [-], 372471316112hypothetical protein 
19HCBAA847_16071543202..1543567 [-], 366471316113hypothetical protein 
20HCBAA847_16081543564..1543764 [-], 201471316114hypothetical protein 
21HCBAA847_16091543683..1544123 [-], 441471316115truncated putative transcriptional regulator 
22HCBAA847_16101544135..1544842 [-], 708471316116putative transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
HH0243

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1HCBAA847_1435(hcp)1384826..1385341 [+], 516471315941secreted protein HH0243

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Proteins        Genes
N/A
N/A