SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	738
Strain	Edwardsiella tarda C07-087
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_020796
Location	2130320..2160865
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	ETAC_09315	2125330..2125833 [+], 504	470463033	3-isopropylmalate dehydratase small subunit 1, putative
2	ETAC_09320	2125823..2126980 [+], 1158	470463034	hypothetical protein
3	ETAC_09325	2127473..2127955 [+], 483	470463035	hypothetical protein
4	ETAC_09330	2128242..2128763 [-], 522	470463036	hypothetical protein
5	ETAC_09335	2130320..2131612 [-], 1293	470463037	ImpA domain-containing protein	TssA
6	ETAC_09340	2132101..2132553 [-], 453	470463038	hypothetical protein	TssE
7	ETAC_09345	2132546..2133088 [-], 543	470463039	hypothetical protein	TssJ
8	ETAC_09350	2133063..2134157 [-], 1095	470463040	hypothetical protein	TssG
9	ETAC_09355	2134121..2135884 [-], 1764	470463041	type VI secretion system protein ImpG	TssF
10	ETAC_09360	2136007..2136483 [-], 477	470463042	hypothetical protein
11	ETAC_09365	2136766..2138361 [-], 1596	470463043	type VI secretion system protein VasJ	TssA
12	ETAC_09370	2138361..2141612 [-], 3252	470463044	hypothetical protein	TssM
13	ETAC_09375	2141767..2142921 [-], 1155	470463045	hypothetical protein
14	ETAC_09380	2142925..2143191 [-], 267	470463046	hypothetical protein	PAAR
15	ETAC_09385	2143222..2143872 [-], 651	470463047	hypothetical protein
16	ETAC_09390	2144690..2145535 [-], 846	470463048	sulfatase modifying factor 1 precursor-like protein
17	ETAC_09395	2145577..2147832 [-], 2256	470463049	hypothetical protein
18	ETAC_09400	2147849..2150365 [-], 2517	470463050	hypothetical protein	TssI
19	ETAC_09405	2150503..2150652 [-], 150	470463051	hypothetical protein
20	ETAC_09410	2151131..2151703 [-], 573	470463052	hypothetical protein
21	ETAC_09415	2151690..2154362 [-], 2673	470463053	type VI secretion ATPase, ClpV1 family protein	TssH
22	ETAC_09420	2154536..2155027 [-], 492	470463054	cytoplasmic protein USSDB7A	TssD
23	ETAC_09425	2155033..2156778 [-], 1746	470463055	hypothetical protein	TagL
24	ETAC_09430	2156782..2157435 [-], 654	470463056	type VI secretion system protein ImpK	TssL
25	ETAC_09435	2157432..2158769 [-], 1338	470463057	hypothetical protein	TssK
26	ETAC_09440	2158788..2160329 [-], 1542	470463058	hypothetical protein	TssC
27	ETAC_09445	2160368..2160865 [-], 498	470463059	hypothetical protein	TssB
28	ETAC_09450	2161583..2161735 [+], 153	470463060	polypeptide destructive to membrane potential
29	ETAC_09455	2162194..2162346 [+], 153	470463061	Hok/gef cell toxic protein
30	ETAC_09460	2163078..2163626 [-], 549	470463062	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
31	ETAC_09465 (uvrC)	2163681..2165513 [-], 1833	470463063	excinuclease ABC subunit C

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	ETAC_09420	2154536..2155027 [-], 492	470463054	cytoplasmic protein USSDB7A	EC042_4529

Download FASTA format files

Proteins Genes

N/A