SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	740
Strain	Xanthomonas axonopodis Xac29-1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_020800
Location	4798864..4854217
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	XAC29_20705	4795356..4798160 [-], 2805	470473917	DNA polymerase I
2	XAC29_20710	4798237..4798527 [+], 291	470473918	hypothetical protein
3	XAC29_20715	4798864..4799907 [-], 1044	470473919	hypothetical protein	TssA
4	XAC29_20720	4799957..4807084 [-], 7128	470473920	YapH protein
5	XAC29_20725	4807096..4808778 [-], 1683	470473921	hemolysin activator protein
6	XAC29_20730	4809227..4812934 [-], 3708	470473922	serine/threonine kinase
7	XAC29_20735	4812939..4813655 [-], 717	470473923	phosphoprotein phosphatase
8	XAC29_20740	4813691..4814227 [-], 537	470473924	hypothetical protein
9	XAC29_20745	4814224..4817754 [-], 3531	470473925	hypothetical protein	TssM
10	XAC29_20750	4817751..4819031 [-], 1281	470473926	hypothetical protein	TssL
11	XAC29_20755	4819013..4820410 [-], 1398	470473927	hypothetical protein	TssK
12	XAC29_20760	4820927..4822243 [-], 1317	470473928	hypothetical protein	Fha
13	XAC29_20765	4822530..4823078 [-], 549	470473929	hypothetical protein
14	XAC29_20770	4823075..4825042 [-], 1968	470473930	hypothetical protein	TssI
15	XAC29_20775	4825193..4826524 [-], 1332	470473931	hypothetical protein
16	XAC29_20780	4826760..4827104 [-], 345	470473932	hypothetical protein	PAAR
17	XAC29_20785	4827118..4829619 [-], 2502	470473933	serine/threonine kinase
18	XAC29_20790	4829616..4830155 [-], 540	470473934	extracytoplasmic sigma factor
19	XAC29_20795	4830429..4831031 [+], 603	470473935	ECF sigma factor
20	XAC29_20800	4831022..4832098 [+], 1077	470473936	transmembrane sensor
21	XAC29_20805	4832563..4835448 [+], 2886	470473937	hypothetical protein
22	XAC29_20810	4835455..4836837 [+], 1383	470473938	6-phytase
23	XAC29_20815	4836908..4838212 [+], 1305	470473939	hypothetical protein
24	XAC29_20820	4838861..4839562 [-], 702	470473940	hypothetical protein
25	XAC29_20825	4840003..4842030 [-], 2028	470473941	hypothetical protein
26	XAC29_20830	4842308..4842577 [-], 270	470473942	hypothetical protein
27	XAC29_20835	4844397..4847177 [-], 2781	470473943	chaperone ClpB	TssH
28	XAC29_20840	4847233..4848273 [-], 1041	470473944	hypothetical protein	TssG
29	XAC29_20845	4848237..4850120 [-], 1884	470473945	hypothetical protein	TssF
30	XAC29_20850	4850125..4850628 [-], 504	470473946	hypothetical protein	TssE
31	XAC29_20855	4850634..4851428 [-], 795	470473947	hypothetical protein	TagJ
32	XAC29_20860	4851627..4852130 [-], 504	470473948	hypothetical protein	TssD
33	XAC29_20865	4852211..4853704 [-], 1494	470473949	hypothetical protein	TssC
34	XAC29_20870	4853708..4854217 [-], 510	470473950	hypothetical protein	TssB
35	XAC29_20875	4854597..4855202 [+], 606	470473951	transcriptional regulator
36	XAC29_20880	4855299..4855745 [-], 447	470473952	hypothetical protein
37	XAC29_20885	4856003..4856593 [-], 591	470473953	nodulation protein
38	XAC29_20890	4856937..4857098 [+], 162	470473954	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A