SecReT6
I. Summary
SecReT6 ID743 insolico
StrainPseudomonas denitrificans ATCC 13867
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020829
Location821031..850744
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1H681_03795816636..817133 [-], 498472323935hypothetical protein 
2H681_03800817156..820032 [-], 2877472323936hypothetical protein 
3H681_03805820048..821019 [-], 972472323937hypothetical protein 
4H681_03810821031..823070 [-], 2040472323938Rhs element Vgr protein  TssI
5H681_03815823093..824100 [-], 1008472323939serine-threonine kinase Stk1  Stk1
6H681_03820824097..824825 [-], 729472323940serine/threonine phosphoprotein phosphatase Stp1  Stp1
7H681_03825824825..828361 [-], 3537472323941type VI secretion protein IcmF  TssM
8H681_03830828377..829246 [-], 870472323942putative outer membrane protein  TssL
9H681_03835829251..830582 [-], 1332472323943hypothetical protein  TssK
10H681_03840830584..831069 [-], 486472323944hypothetical protein  TssJ
11H681_03845831075..832271 [-], 1197472323945FHA domain-containing protein  Fha
12H681_03850832289..832429 [-], 141472323946hypothetical protein 
13H681_03855832497..834005 [-], 1509472323947Fis family transcriptional regulator  Sfa2
14H681_03860834016..836598 [-], 2583472323948ClpB protein  TssH
15H681_03865836613..837620 [-], 1008472323949hypothetical protein  TssG
16H681_03870837584..839371 [-], 1788472323950hypothetical protein  TssF
17H681_03875839422..839688 [-], 267472323951hypothetical protein 
18H681_03880839917..840450 [-], 534472323952hypothetical protein 
19H681_03885840496..840828 [-], 333472323953hypothetical protein 
20H681_03890841035..841418 [-], 384472323954hypothetical protein 
21H681_03895841590..841976 [-], 387472323955hypothetical protein 
22H681_03900841982..842830 [-], 849472323956hypothetical protein 
23H681_03905842835..843338 [-], 504472323957hypothetical protein  PAAR
24H681_03910843349..843756 [-], 408472323958GPW/gp25 family protein  TssE
25H681_03915843771..845246 [-], 1476472323959hypothetical protein  TssC
26H681_03920845274..845774 [-], 501472323960hypothetical protein  TssB
27H681_03925845809..847365 [-], 1557472323961hypothetical protein  TssA
28H681_03930848040..848558 [+], 519472323962hypothetical protein  TssD
29H681_03935848690..850744 [+], 2055472323963Rhs element Vgr protein  TssI
30H681_03940850741..851307 [+], 567472323964hypothetical protein 
31H681_03945851307..854012 [+], 2706472323965hypothetical protein 
32H681_03950854009..854959 [+], 951472323966hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1H681_03930848040..848558 [+], 519472323962hypothetical protein PSPTO_5435

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU