I. Summary
SecReT6 ID744 insolico
StrainPseudomonas denitrificans ATCC 13867
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1H681_148303346033..3347355 [-], 1323472326130CzcB family heavy metal RND efflux membrane fusion protein 
2H681_148353347505..3348485 [-], 981472326131CzcC family heavy metal RND efflux outer membrane protein 
3H681_148503350049..3350555 [-], 507472326132N-acetyltransferase GCN5 
4H681_148553350777..3351835 [-], 1059472326133hypothetical protein  TssA
5H681_148603351832..3355656 [-], 3825472326134type VI secretion protein IcmF  TssM
6H681_148653355653..3356423 [-], 771472326135type VI secretion protein DotU  TssL
7H681_148703356436..3357725 [-], 1290472326136hypothetical protein  TssK
8H681_148753357821..3358246 [-], 426472326137hypothetical protein 
9H681_148803358504..3359076 [+], 573472326138hypothetical protein  TssB
10H681_148853359101..3360588 [+], 1488472326139hypothetical protein  TssC
11H681_148903360662..3361159 [+], 498472326140hypothetical protein  TssD
12H681_148953361172..3361600 [+], 429472326141hypothetical protein  TssE
13H681_149003361584..3363410 [+], 1827472326142type VI secretion protein VasA  TssF
14H681_149053363374..3364387 [+], 1014472326143hypothetical protein  TssG
15H681_149103364387..3366936 [+], 2550472326144type VI secretion ATPase  TssH
16H681_149153367683..3369689 [+], 2007472326145hypothetical protein  TssI
17H681_149203369700..3370239 [+], 540472326146hypothetical protein 
18H681_149253370303..3371205 [+], 903472326147hypothetical protein 
19H681_149303371242..3371637 [-], 396472326148hypothetical protein 
20H681_149353372019..3372714 [-], 696472326149hypothetical protein 
21H681_149403373084..3374631 [+], 1548472326150diguanylate cyclase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
PSPTO_5435 , PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1H681_060551326142..1326660 [-], 519472324385hypothetical protein PSPTO_5435
2H681_119202636050..2636568 [+], 519472325548hypothetical protein PSPTO_5435

Download FASTA format files
Proteins        Genes