I. Summary

SecReT6 ID	749
Strain	Taylorella asinigenitalis 14/45
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_021033
Location	1280860..1314297
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	KUM_1235	1276153..1277214 [-], 1062	479192286	hypothetical protein
2	KUM_1236	1277216..1279957 [-], 2742	479192287	hypothetical protein
3	KUM_1237	1279959..1280846 [-], 888	479192288	hypothetical protein
4	KUM_1238	1280860..1281741 [-], 882	479192289	hypothetical protein
5	KUM_1239	1281749..1282624 [-], 876	479192290	hypothetical protein
6	KUM_1240	1282634..1284340 [-], 1707	479192291	RHS domain protein	TssI
7	KUM_1241	1284745..1285365 [-], 621	479192292	hypothetical protein
8	KUM_1242	1285687..1288158 [+], 2472	479192293	TonB-dependent receptor
9	KUM_1243	1288237..1288941 [-], 705	479192294	hypothetical protein
10	KUM_1244	1289023..1290918 [-], 1896	479192295	hypothetical protein	TssF
11	KUM_1245	1290918..1291481 [-], 564	479192296	lysozyme-like protein	TssE
12	KUM_1246	1291491..1292324 [-], 834	479192297	ImpE-like protein	TagJ
13	KUM_1247	1292418..1292903 [-], 486	479192298	hypothetical protein	TssD
14	KUM_1248	1292972..1294465 [-], 1494	479192299	hypothetical protein	TssC
15	KUM_1249	1294474..1295007 [-], 534	479192300	hypothetical protein	TssB
16	KUM_1250	1295045..1296112 [-], 1068	479192301	hypothetical protein	TssA
17	KUM_1251	1296202..1298994 [-], 2793	479192302	hypothetical protein
18	KUM_1252	1299000..1299722 [-], 723	479192303	hypothetical protein
19	KUM_1253	1299724..1303350 [-], 3627	479192304	hypothetical protein	TssM
20	KUM_1254	1303362..1304699 [-], 1338	479192305	OmpA-family protein	TssL
21	KUM_1255	1304710..1306059 [-], 1350	479192306	hypothetical protein	TssK
22	KUM_1256	1306072..1306581 [-], 510	479192307	putative lipoprotein	TssJ
23	KUM_1257	1306813..1307289 [+], 477	479192308	putative lipoprotein
24	KUM_1258	1307404..1309968 [+], 2565	479192309	FHA domain protein
25	KUM_1259	1310018..1312864 [-], 2847	479192310	Type VI secretion ClpV1 ATPase	TssH
26	KUM_1260	1313014..1314297 [+], 1284	479192311	hypothetical protein	TssG
27	KUM_1261	1314251..1315168 [-], 918	479192312	putative SAM-dependent methyltransferase
28	KUM_1262	1315216..1315917 [+], 702	479192313	putative phophoribosyltransferase protein
29	KUM_1263	1315920..1316390 [+], 471	479192314	rRNA methylase
30	KUM_1264 (trkH)	1316394..1317866 [-], 1473	479192315	Trk system potassium uptake protein
31	KUM_1265 (trkA)	1317875..1319251 [-], 1377	479192316	Trk system potassium uptake protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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