I. Summary

SecReT6 ID	750
Strain	Taylorella equigenitalis 14/56
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_021036
Location	1177478..1210472
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	KUK_1087 (trkA)	1172521..1173897 [+], 1377	479197076	Trk system potassium uptake protein
2	KUK_1088 (trkH)	1173906..1175378 [+], 1473	479197077	Trk system potassium uptake protein
3	KUK_1089	1175385..1175855 [-], 471	479197078	rRNA methylase
4	KUK_1090	1175858..1176559 [-], 702	479197079	putative phophoribosyltransferase protein
5	KUK_1091	1176601..1177530 [+], 930	479197080	putative SAM-dependent methyltransferase
6	KUK_1092	1177478..1178581 [-], 1104	479197081	hypothetical protein	TssG
7	KUK_1093	1178725..1181550 [+], 2826	479197082	Type VI secretion ClpV1 ATPase	TssH
8	KUK_1094	1181700..1184351 [-], 2652	479197083	FHA domain protein
9	KUK_1095	1184466..1184942 [-], 477	479197084	putative lipoprotein
10	KUK_1096	1185172..1185681 [+], 510	479197085	putative lipoprotein	TssJ
11	KUK_1097	1185694..1187046 [+], 1353	479197086	hypothetical protein	TssK
12	KUK_1098	1187054..1188391 [+], 1338	479197087	OmpA-family protein	TssL
13	KUK_1099	1188403..1192029 [+], 3627	479197088	hypothetical protein	TssM
14	KUK_1100	1192031..1192753 [+], 723	479197089	hypothetical protein
15	KUK_1101	1192759..1193658 [+], 900	479197090	hypothetical protein
16	KUK_1102	1193661..1194212 [+], 552	479197091	RHS domain family protein
17	KUK_1103	1194231..1194623 [+], 393	479197092	hypothetical protein
18	KUK_1104	1195254..1197137 [+], 1884	479197093	hypothetical protein
19	KUK_1105	1197226..1198287 [+], 1062	479197094	hypothetical protein	TssA
20	KUK_1106	1198325..1198858 [+], 534	479197095	hypothetical protein	TssB
21	KUK_1107	1198867..1200360 [+], 1494	479197096	hypothetical protein	TssC
22	KUK_1108	1200428..1200913 [+], 486	479197097	hypothetical protein	TssD
23	KUK_1109	1201001..1201834 [+], 834	479197098	ImpE-like protein	TagJ
24	KUK_1110	1201845..1202408 [+], 564	479197099	lysozyme-like protein	TssE
25	KUK_1111	1202408..1204303 [+], 1896	479197100	hypothetical protein	TssF
26	KUK_1112	1204383..1205087 [+], 705	479197101	hypothetical protein
27	KUK_1113	1205165..1207648 [-], 2484	479197102	TonB-dependent receptor
28	KUK_1114	1207913..1208533 [+], 621	479197103	hypothetical protein
29	KUK_1115	1208928..1210472 [+], 1545	479197104	Rhs family protein	TssI
30	KUK_1116	1210498..1211364 [+], 867	479197105	hypothetical protein
31	KUK_1117	1211377..1214043 [+], 2667	479197106	hypothetical protein
32	KUK_1118	1214046..1215122 [+], 1077	479197107	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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