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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | AvCA_26560 | 2717535..2718167 [-], 633 | 482896656 | hypothetical protein | |
2 | AvCA_26570 | 2718218..2719249 [-], 1032 | 482896655 | Pentapeptide repeat protein | |
3 | AvCA_26580 | 2719273..2721891 [-], 2619 | 482896654 | Pentapeptide repeat protein | |
4 | AvCA_26590 | 2721893..2722243 [-], 351 | 482896653 | hypothetical protein | |
5 | AvCA_26600 | 2722456..2724519 [-], 2064 | 482896652 | Rhs element Vgr protein | TssI |
6 | AvCA_26610 | 2724524..2727184 [-], 2661 | 482896651 | ClpA/B-type protease | TssH |
7 | AvCA_26620 | 2727177..2728190 [-], 1014 | 482896650 | hypothetical protein | TssG |
8 | AvCA_26630 | 2728214..2730076 [-], 1863 | 482896649 | hypothetical protein | TssF |
9 | AvCA_26640 | 2730076..2730618 [-], 543 | 482896648 | hypothetical protein | TssE |
10 | AvCA_26650 | 2730721..2731203 [-], 483 | 482896647 | hypothetical protein | TssD |
11 | AvCA_26660 | 2731262..2732764 [-], 1503 | 482896646 | hypothetical protein | TssC |
12 | AvCA_26670 | 2732778..2733344 [-], 567 | 482896645 | hypothetical protein (UCP028301) | TssB |
13 | AvCA_26680 | 2733420..2734454 [-], 1035 | 482896644 | ImpA domain-containing protein | TssA |
14 | AvCA_26690 | 2734463..2736241 [-], 1779 | 482896643 | Protein kinase | |
15 | AvCA_26700 | 2736241..2736939 [-], 699 | 482896642 | hypothetical protein | |
16 | AvCA_26710 | 2736936..2740553 [-], 3618 | 482896641 | hypothetical protein | TssM |
17 | AvCA_26720 | 2740550..2741842 [-], 1293 | 482896640 | hypothetical protein | TssL |
18 | AvCA_26730 | 2741824..2743191 [-], 1368 | 482896639 | hypothetical protein | TssK |
19 | AvCA_26740 | 2743188..2743766 [-], 579 | 482896638 | hypothetical protein | TssJ |
20 | AvCA_26760 | 2744153..2744473 [+], 321 | 482894948 | hypothetical protein | |
21 | AvCA_26770 | 2744511..2746208 [+], 1698 | 482894947 | hypothetical protein | Fha |
22 | AvCA_26780 | 2746190..2746960 [+], 771 | 482894946 | Protein phosphatase 2C-like protein | |
23 | AvCA_26790 | 2747079..2747435 [+], 357 | 482894945 | hypothetical protein | |
24 | AvCA_26800 | 2747443..2747934 [+], 492 | 482894944 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein