I. Summary

SecReT6 ID	753
Strain	Azotobacter vinelandii CA
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_021149
Location	2722456..2743766
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	AvCA_26560	2717535..2718167 [-], 633	482896656	hypothetical protein
2	AvCA_26570	2718218..2719249 [-], 1032	482896655	Pentapeptide repeat protein
3	AvCA_26580	2719273..2721891 [-], 2619	482896654	Pentapeptide repeat protein
4	AvCA_26590	2721893..2722243 [-], 351	482896653	hypothetical protein
5	AvCA_26600	2722456..2724519 [-], 2064	482896652	Rhs element Vgr protein	TssI
6	AvCA_26610	2724524..2727184 [-], 2661	482896651	ClpA/B-type protease	TssH
7	AvCA_26620	2727177..2728190 [-], 1014	482896650	hypothetical protein	TssG
8	AvCA_26630	2728214..2730076 [-], 1863	482896649	hypothetical protein	TssF
9	AvCA_26640	2730076..2730618 [-], 543	482896648	hypothetical protein	TssE
10	AvCA_26650	2730721..2731203 [-], 483	482896647	hypothetical protein	TssD
11	AvCA_26660	2731262..2732764 [-], 1503	482896646	hypothetical protein	TssC
12	AvCA_26670	2732778..2733344 [-], 567	482896645	hypothetical protein (UCP028301)	TssB
13	AvCA_26680	2733420..2734454 [-], 1035	482896644	ImpA domain-containing protein	TssA
14	AvCA_26690	2734463..2736241 [-], 1779	482896643	Protein kinase
15	AvCA_26700	2736241..2736939 [-], 699	482896642	hypothetical protein
16	AvCA_26710	2736936..2740553 [-], 3618	482896641	hypothetical protein	TssM
17	AvCA_26720	2740550..2741842 [-], 1293	482896640	hypothetical protein	TssL
18	AvCA_26730	2741824..2743191 [-], 1368	482896639	hypothetical protein	TssK
19	AvCA_26740	2743188..2743766 [-], 579	482896638	hypothetical protein	TssJ
20	AvCA_26760	2744153..2744473 [+], 321	482894948	hypothetical protein
21	AvCA_26770	2744511..2746208 [+], 1698	482894947	hypothetical protein	Fha
22	AvCA_26780	2746190..2746960 [+], 771	482894946	Protein phosphatase 2C-like protein
23	AvCA_26790	2747079..2747435 [+], 357	482894945	hypothetical protein
24	AvCA_26800	2747443..2747934 [+], 492	482894944	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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