I. Summary

SecReT6 ID	754
Strain	Azotobacter vinelandii CA
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_021149
Location	5142553..5161476
Comment
Function	N/A
T6SS Type	Type i; subtype i4a
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	AvCA_50690 (modG)	5138192..5138620 [+], 429	482893789	Mo processing, homeostasis
2	AvCA_50700	5138703..5139653 [+], 951	482894216	ABC transporter ATP binding component
3	AvCA_50710	5139607..5140500 [-], 894	482895842	ABC type tungstate transporter, permease component
4	AvCA_50720	5140643..5141338 [-], 696	482895841	ABC transporter, permease protein
5	AvCA_50730 (modA3)	5141335..5142111 [-], 777	482893785	molybdate ABC transporter, periplasmic molybdate-binding protein
6	AvCA_50750	5142553..5143644 [-], 1092	482895840	ImpA-related protein	TssA
7	AvCA_50760	5143660..5147478 [-], 3819	482895839	hypothetical protein	TssM
8	AvCA_50770	5147475..5148239 [-], 765	482895838	hypothetical protein	TssL
9	AvCA_50780	5148257..5149582 [-], 1326	482895837	hypothetical protein	TssK
10	AvCA_50790	5149628..5150125 [-], 498	482895836	hypothetical protein
11	AvCA_50800	5150313..5150876 [+], 564	482894215	hypothetical protein	TssB
12	AvCA_50810	5150909..5152390 [+], 1482	482894214	DUF877 family protein	TssC
13	AvCA_50820	5152468..5152965 [+], 498	482894213	DUF796 family protein	TssD
14	AvCA_50830	5152981..5153433 [+], 453	482894212	hypothetical protein	TssE
15	AvCA_50840	5153417..5155210 [+], 1794	482894211	hypothetical protein	TssF
16	AvCA_50850	5155174..5156196 [+], 1023	482894210	hypothetical protein	TssG
17	AvCA_50860	5156199..5158727 [+], 2529	482894209	AAA ATPase	TssH
18	AvCA_50870	5159470..5161476 [+], 2007	482894208	Rhs element Vgr protein	TssI
19	AvCA_50880	5161487..5162032 [+], 546	482894207	hypothetical protein
20	AvCA_50890	5162029..5162361 [-], 333	482895835	hypothetical protein
21	AvCA_50900	5162608..5163003 [-], 396	482895834	nitrogen fixation-related protein
22	AvCA_50910 (nafY)	5163000..5163731 [-], 732	482893823	Nitrogen fixation-related protein, gamma subunit
23	AvCA_50920 (rnfH)	5163756..5164016 [-], 261	482894019	Electron transport complex, RnfABCDGE type, H subunit
24	AvCA_50930 (rnfE1)	5164038..5164754 [-], 717	482894016	Electron transport complex, RnfABCDGE type, E subunit
25	AvCA_50940 (rnfG1)	5164768..5165457 [-], 690	482894018	Electron transport complex, RnfABCDGE type, G subunit

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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