SecReT6
I. Summary
SecReT6 ID756 insolico
StrainAzotobacter vinelandii CA6
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021150
Location5104315..5118316
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101111
ComponentTssGTssJTssKTssM
Number1010
10
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AvCA6_503105099557..5101128 [-], 1572482902445ABC transporter ATP-binding protein 
2AvCA6_503205101169..5102116 [-], 948482902446ABC transporter substrate binding protein 
3AvCA6_507705104315..5105079 [-], 765482902447hypothetical protein  TssL
4AvCA6_507805105097..5106422 [-], 1326482902448hypothetical protein  TssK
5AvCA6_507905106468..5106965 [-], 498482902449hypothetical protein 
6AvCA6_508005107153..5107716 [+], 564482902450hypothetical protein  TssB
7AvCA6_508105107749..5109230 [+], 1482482902451DUF877 family protein  TssC
8AvCA6_508205109308..5109805 [+], 498482902452DUF796 family protein  TssD
9AvCA6_508305109821..5110273 [+], 453482902453hypothetical protein  TssE
10AvCA6_508405110257..5112050 [+], 1794482902454hypothetical protein  TssF
11AvCA6_508505112014..5113036 [+], 1023482902455hypothetical protein  TssG
12AvCA6_508605113039..5115567 [+], 2529482902456AAA ATPase  TssH
13AvCA6_508705116310..5118316 [+], 2007482902457Rhs element Vgr protein  TssI
14AvCA6_508805118327..5118872 [+], 546482902458hypothetical protein 
15AvCA6_508905118869..5119201 [-], 333482902459hypothetical protein 
16AvCA6_509005119448..5119843 [-], 396482902460nitrogen fixation-related protein 
17AvCA6_50910 (nafY)5119840..5120571 [-], 732482898429Nitrogen fixation-related protein, gamma subunit 
18AvCA6_50920 (rnfH)5120596..5120856 [-], 261482898763Electron transport complex, RnfABCDGE type, H subunit 
19AvCA6_50930 (rnfE1)5120878..5121594 [-], 717482898760Electron transport complex, RnfABCDGE type, E subunit 
20AvCA6_50940 (rnfG1)5121608..5122297 [-], 690482898762Electron transport complex, RnfABCDGE type, G subunit 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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