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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | STU288_13285 | 2752198..2752461 [-], 264 | 482905190 | hypothetical protein | |
2 | STU288_13290 | 2752455..2756549 [-], 4095 | 482905191 | putative RHS-like protein | PAAR |
3 | STU288_13295 | 2756568..2757014 [-], 447 | 482905192 | hypothetical protein | |
4 | STU288_13300 | 2757038..2759227 [-], 2190 | 482905193 | putative cytoplasmic protein | TssI |
5 | STU288_13305 | 2759624..2760142 [-], 519 | 482905194 | SPI-6 associated protein | |
6 | STU288_13310 | 2760169..2760585 [-], 417 | 482905195 | hypothetical protein | |
7 | STU288_13315 | 2760582..2761370 [-], 789 | 482905196 | putative cytoplasmic protein | |
8 | STU288_13320 | 2761370..2765239 [-], 3870 | 482905197 | putative inner membrane protein | TssM |
9 | STU288_13325 | 2765273..2765629 [-], 357 | 482905198 | putative shiga-like toxin A subunit | |
10 | STU288_13330 | 2765907..2766680 [-], 774 | 482905199 | membrane protein, virulence associated protein | |
11 | STU288_13335 | 2766685..2767989 [-], 1305 | 482905200 | hypothetical protein | TssL |
12 | STU288_13340 | 2767986..2769329 [-], 1344 | 482905201 | type VI secretion protein | TssK |
13 | STU288_13345 | 2769333..2769869 [-], 537 | 482905202 | putative outer membrane lipoprotein | TssJ |
14 | STU288_13350 | 2769936..2770421 [-], 486 | 482905203 | Protein hcp1 | TssD |
15 | STU288_13355 | 2770564..2770935 [-], 372 | 482905204 | putative periplasmic protein | STM0278 (i) |
16 | STU288_13360 | 2770932..2771417 [-], 486 | 482905205 | putative cytoplasmic protein | STM0277 (e) |
17 | STU288_13365 | 2771547..2771654 [-], 108 | 482905206 | lipoprotein | |
18 | STU288_13370 | 2771722..2772207 [-], 486 | 482905207 | Protein hcp1 | TssD |
19 | STU288_13375 | 2773093..2774601 [-], 1509 | 482905208 | SciI protein | TssC |
20 | STU288_13380 | 2774625..2775167 [-], 543 | 482905209 | SPI-6 associated protein | TssB |
21 | STU288_13385 | 2775267..2777906 [-], 2640 | 482905210 | SPI-6 associated protein | TssH |
22 | STU288_13390 | 2778274..2779176 [+], 903 | 482905211 | SPI-6 associated protein | |
23 | STU288_13395 | 2779163..2779987 [+], 825 | 482905212 | SciE protein | TagJ |
24 | STU288_13400 | 2779984..2780478 [+], 495 | 482905213 | hypothetical protein | TssE |
25 | STU288_13405 | 2780494..2782377 [+], 1884 | 482905214 | hypothetical protein | TssF |
26 | STU288_13410 | 2782374..2783369 [+], 996 | 482905215 | SPI-6 associated protein | TssG |
27 | STU288_13415 | 2783380..2784435 [+], 1056 | 482905216 | putative cytoplasmic protein | TssA |
28 | STU288_13420 | 2784526..2784633 [-], 108 | 482905217 | hypothetical protein | |
29 | STU288_13425 | 2784967..2785698 [-], 732 | 482905218 | DNA polymerase III subunit epsilon | |
30 | STU288_13430 (rnhA) | 2785762..2786229 [+], 468 | 482905219 | ribonuclease H | |
31 | STU288_13435 | 2786226..2786948 [-], 723 | 482905220 | hypothetical protein | |
32 | STU288_13440 | 2786983..2787738 [+], 756 | 482905221 | hydroxyacylglutathione hydrolase | |
33 | STU288_13445 (mltD) | 2787810..2789177 [+], 1368 | 482905222 | membrane-bound lytic murein transglycosylase D | |
34 | STU288_13450 | 2789233..2790003 [-], 771 | 482905223 | putative methyltransferase | |
35 | STU288_13455 | 2790081..2790881 [-], 801 | 482905224 | hypothetical protein | |
36 | STU288_13460 | 2791013..2792188 [-], 1176 | 482905225 | inner membrane transport protein YdhP | |
37 | STU288_13465 | 2792293..2793207 [+], 915 | 482905226 | LysR family transcriptional regulator | |
38 | STU288_13470 (dkgB) | 2793228..2794031 [-], 804 | 482905227 | 2,5-diketo-D-gluconate reductase B | |
39 | STU288_13475 | 2800034..2802607 [-], 2574 | 482905228 | protein disaggregation chaperone | TssH |
40 | STU288_13480 | 2802737..2803468 [-], 732 | 482905229 | hypothetical protein | |
41 | STU288_13485 (rluD) | 2803465..2804445 [-], 981 | 482905230 | 23S rRNA pseudouridine synthase D | |
42 | STU288_13490 | 2804577..2805314 [+], 738 | 482905231 | outer membrane biogenesis protein BamD | |
43 | STU288_13495 | 2805586..2805924 [+], 339 | 482905232 | translation inhibitor protein RaiA | |
44 | STU288_13500 (pheA) | 2806175..2807335 [+], 1161 | 482905233 | bifunctional chorismate mutase/prephenate dehydratase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein