I. Summary
SecReT6 ID759 insolico
StrainBurkholderia thailandensis MSMB121
Repliconchromosome II [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BTI_3975445258..446283 [+], 1026488605596N-acetylmuramoyl-L-alanine amidase family protein 
2BTI_3976 (tibC)446431..447714 [+], 1284488607479glycosyltransferase tibC 
3BTI_3977448462..448821 [+], 360488605686hemagglutinin family protein 
4BTI_3978448871..449227 [+], 357488606152putative lipoprotein 
5BTI_3979449468..451189 [-], 1722488606891impA-related N-terminal family protein  TssA
6BTI_3980451180..451914 [-], 735488606385transcriptional regulatory, C terminal family protein  VirG
7BTI_3981451911..453719 [-], 1809488605718his Kinase A domain protein  VirA
8BTI_3982453979..454473 [+], 495488607150hypothetical protein  TssB
9BTI_3983454470..455996 [+], 1527488605881hypothetical protein  TssC
10BTI_3984 (hcpC)456169..456657 [+], 489488607066major exported protein  TssD
11BTI_3985456636..457106 [+], 471488607039lysozyme family protein  TssE
12BTI_3986457135..458886 [+], 1752488605730hypothetical protein  TssF
13BTI_3987458874..459896 [+], 1023488607318hypothetical protein  TssG
14BTI_3988 (clpV)459883..462729 [+], 2847488607015type VI secretion ATPase, ClpV1 family  TssH
15BTI_3989462756..465740 [+], 2985488607230Rhs element Vgr family protein  TssI
16BTI_3990465766..468426 [+], 2661488606691pentapeptide repeats family protein 
17BTI_3991468444..469508 [+], 1065488606697pentapeptide repeats family protein 
18BTI_3992469622..470257 [+], 636488605379hypothetical protein 
19BTI_3993470285..470677 [+], 393488605992hypothetical protein 
20BTI_3994470687..471463 [+], 777488605568type VI secretion lipofamily protein  TssJ
21BTI_3995471496..472893 [+], 1398488606320hypothetical protein  TssK
22BTI_3996472890..473606 [+], 717488605792type IV/VI secretion system, DotU family domain protein  TssL
23BTI_3997473618..477481 [+], 3864488605950imcF-related N-terminal domain protein  TssM
24BTI_3999477958..478800 [+], 843488605586ubiquitin carboxyl-terminal hydrolase family protein 
25BTI_3998478791..479846 [-], 1056488606557bacterial regulatory helix-turn-helix s, AraC family protein 
26BTI_4000479999..480442 [-], 444488607500hypothetical protein 
27BTI_4001480560..481204 [-], 645488606936bacterial regulatory s, luxR family protein 
28BTI_4002481479..481931 [-], 453488605810tir chaperone family protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
BTH_II0868 , BMAA0737

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BTI_3984(hcpC)456169..456657 [+], 489488607066major exported protein BTH_II0868
2BTI_3989462756..465740 [+], 2985488607230Rhs element Vgr family protein BMAA0737

Download FASTA format files
Proteins        Genes