I. Summary

SecReT6 ID	761
Strain	Burkholderia thailandensis MSMB121
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_021174
Location	1631925..1654345
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

13

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BTI_4905	1627085..1627243 [-], 159	488605925	aldehyde dehydrogenase family protein
2	BTI_4906	1627494..1629395 [+], 1902	488607179	transglutaminase-like superfamily protein
3	BTI_4907	1629447..1630814 [-], 1368	488606190	FHA domain protein	Fha
4	BTI_4908	1630869..1631240 [-], 372	488605386	hypothetical protein
5	BTI_4909	1631925..1632443 [+], 519	488606914	type VI secretion lipofamily protein	TssJ
6	BTI_4910	1632440..1633822 [+], 1383	488606092	hypothetical protein	TssK
7	BTI_4911	1633838..1635151 [+], 1314	488605448	type VI secretion system OmpA/MotB family protein	TssL
8	BTI_4912	1635154..1638783 [+], 3630	488605700	intracellular multiplication and macrophage-killing family protein	TssM
9	BTI_4913	1638780..1639637 [+], 858	488607090	hypothetical protein
10	BTI_4914	1639826..1641955 [+], 2130	488606641	tyrosine kinase family protein
11	BTI_4915	1642008..1643096 [+], 1089	488606693	impA-related N-terminal family protein	TssA
12	BTI_4916	1643159..1643740 [+], 582	488606892	hypothetical protein	TssB
13	BTI_4917	1643733..1645241 [+], 1509	488605583	hypothetical protein	TssC
14	BTI_4918	1645302..1645793 [+], 492	488607213	hypothetical protein	TssD
15	BTI_4919	1645854..1646372 [+], 519	488605558	lysozyme family protein	TssE
16	BTI_4920	1646377..1648248 [+], 1872	488607087	hypothetical protein	TssF
17	BTI_4921	1648245..1649474 [+], 1230	488607452	hypothetical protein	TssG
18	BTI_4922 (clpV)	1649487..1652144 [+], 2658	488607023	type VI secretion ATPase, ClpV1 family	TssH
19	BTI_4923	1652141..1654345 [+], 2205	488607407	Rhs element Vgr family protein	TssI
20	BTI_4924	1654403..1655626 [+], 1224	488605507	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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