SecReT6
I. Summary
SecReT6 ID765 insolico
StrainBurkholderia sp. RPE64
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_021287
Location337535..346771
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number010010111
ComponentTssGTssJTssKTssM
Number1100
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BRPE64_ACDS03290 (rplM)332662..333090 [+], 42950751486250S ribosomal protein L13 
2BRPE64_ACDS03300 (rpsI)333102..333494 [+], 39350751486330S ribosomal protein S9 
3BRPE64_ACDS03310333737..334069 [+], 333507514864putative iron-sulfur cluster insertion protein ErpA 1 
4BRPE64_ACDS03320334158..335327 [-], 1170507514865anhydro-N-acetylmuramic acid kinase 
5BRPE64_ACDS03330 (tyrS)335648..336904 [+], 1257507514866tyrosine--tRNA ligase 
6BRPE64_ACDS03340 (dtd)336909..337367 [+], 459507514867D-tyrosyl-tRNA(Tyr) deacylase 
7BRPE64_ACDS03350337535..339031 [+], 1497507514868hypothetical protein  TssC
8BRPE64_ACDS03360339157..339642 [+], 486507514869type VI secretion system effector Hcp1 family  TssD
9BRPE64_ACDS03370339754..340269 [+], 516507514870hypothetical protein  TssJ
10BRPE64_ACDS03380340640..341119 [+], 480507514871hypothetical protein  TssE
11BRPE64_ACDS03390342635..344527 [+], 1893507514872hypothetical protein  TssF
12BRPE64_ACDS03400344530..345588 [+], 1059507514873type VI secretion protein VC_A0111 family  TssG
13BRPE64_ACDS03410345677..346771 [+], 1095507514874ImpA domain protein  TssA
14BRPE64_ACDS03420 (ruvB)346795..347853 [-], 1059507514875Holliday junction ATP-dependent DNA helicase RuvB 
15BRPE64_ACDS03430 (ruvA)347911..348492 [-], 582507514876Holliday junction ATP-dependent DNA helicase RuvA 
16BRPE64_ACDS03440 (ruvC)348517..349059 [-], 543507514877crossover junction endodeoxyribonuclease RuvC 
17BRPE64_ACDS03450 (purH)349176..350750 [-], 1575507514878bifunctional purine biosynthesis protein PurH 
18BRPE64_ACDS03460 (fis)350806..351039 [-], 234507514879DNA-binding protein Fis 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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