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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SENTW_0221 (dniR) | 5319..6686 [-], 1368 | 409248681 | transcriptional regulator for nitrite reductase (cytochrome c552) | |
2 | SENTW_0222 (gloB) | 6758..7513 [-], 756 | 409248682 | probable hydroxyacylglutathione hydrolase | |
3 | SENTW_0223 (yafS) | 7548..8270 [+], 723 | 409248683 | Uncharacterized protein yafS | |
4 | SENTW_0224 (rnhA) | 8267..8734 [-], 468 | 409248684 | RNase HI, degrades RNA of DNA-RNA hybrids | |
5 | SENTW_0225 (dnaQ) | 8789..9529 [+], 741 | 409248685 | DNA polymerase III epsilon subunit | |
6 | SENTW_0226 (safA) | 10058..11113 [-], 1056 | 409248686 | putative cytoplasmic protein | TssA |
7 | SENTW_0227 (sciB) | 11124..12119 [-], 996 | 409248687 | hypothetical protein | TssG |
8 | SENTW_0228 (safC) | 12116..13999 [-], 1884 | 409248688 | hypothetical protein | TssF |
9 | SENTW_0229 (sciD) | 14015..14509 [-], 495 | 409248689 | hypothetical protein | TssE |
10 | SENTW_0230 (sat1) | 14506..15345 [-], 840 | 409248690 | hypothetical protein | TagJ |
11 | SENTW_0231 (sat2) | 15317..16219 [-], 903 | 409248691 | putative cytoplasmic protein | |
12 | SENTW_0232 (clpB) | 16587..19226 [+], 2640 | 409248692 | Chaperone protein clpB | TssH |
13 | SENTW_0233 | 19326..19868 [+], 543 | 409248693 | hypothetical protein | TssB |
14 | SENTW_0234 (sirA) | 19892..21400 [+], 1509 | 409248694 | hypothetical protein | TssC |
15 | SENTW_0235 | 21453..21854 [+], 402 | 409248695 | hypothetical protein | STY0300 (e) |
16 | SENTW_0236 | 21826..22251 [+], 426 | 409248696 | hypothetical protein | STY0301 (i) |
17 | SENTW_0237 | 22188..22295 [-], 108 | 409248697 | hypothetical protein | |
18 | SENTW_0238 (sciK1) | 22488..22973 [+], 486 | 409248698 | Protein hcp1 | TssD |
19 | SENTW_0239 | 23277..23762 [+], 486 | 409248699 | putative cytoplasmic protein | STM0277 (e) |
20 | SENTW_0240 | 23747..24130 [+], 384 | 409248700 | putative periplasmic protein | STM0278 (i) |
21 | SENTW_0241 (sciK3) | 24273..24758 [+], 486 | 409248701 | Protein hcp1 | TssD |
22 | SENTW_0242 | 24825..25361 [+], 537 | 409248702 | hypothetical protein | TssJ |
23 | SENTW_0243 (sciO) | 25365..26708 [+], 1344 | 409248703 | hypothetical protein | TssK |
24 | SENTW_0244 (ytxE) | 26705..28009 [+], 1305 | 409248704 | Uncharacterized 24.6 kDa protein in ccpA 3'region ORF2 | TssL |
25 | SENTW_0245 (sciQ) | 28014..28787 [+], 774 | 409248705 | hypothetical protein | |
26 | SENTW_0246 (sciR) | 28978..29421 [+], 444 | 409248706 | putative shiga-like toxin A subunit | |
27 | SENTW_0247 (sciS) | 29455..33324 [+], 3870 | 409248707 | hypothetical protein | TssM |
28 | SENTW_0248 (sciT) | 33324..34091 [+], 768 | 409248708 | hypothetical protein | |
29 | SENTW_0249 | 34589..35062 [+], 474 | 409248709 | probable secreted protein | |
30 | SENTW_0250 | 35620..36081 [+], 462 | 409248710 | probable secreted protein | |
31 | SENTW_0251 | 36090..36197 [+], 108 | 409248711 | hypothetical protein | |
32 | SENTW_0252 | 36166..36909 [+], 744 | 409248712 | hypothetical protein | |
33 | SENTW_0253 (rhsG) | 37404..39605 [+], 2202 | 409248713 | Rhs-family protein | TssI |
34 | SENTW_0254 | 39629..40075 [+], 447 | 409248714 | hypothetical protein | |
35 | SENTW_0255 (rhsD1) | 40094..44182 [+], 4089 | 409248715 | Protein rhsA | PAAR |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein