I. Summary
Component | TssH | TssD | TssL | TssI | TssA | TssB | TssC | TssE | TssF |
Number | 2 | 2 | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
Component | TssG | TssJ | TssK | TssM |
Number | 1 | 1 | 1 | 1 |
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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SENTW_1053 (yjhC) | 47004..48107 [+], 1104 | 409249522 | putative oxidoreductase | |
2 | SENTW_1054 | 48694..49152 [-], 459 | 409249523 | hypothetical protein | |
3 | SENTW_1055 | 49276..49647 [-], 372 | 409249524 | hypothetical protein | |
4 | SENTW_1056 | 50116..51006 [-], 891 | 409249525 | hypothetical protein | |
5 | SENTW_1057 (hcp5) | 51021..51500 [-], 480 | 409249526 | Major exported protein Secreted protein hcp | TssD |
6 | SENTW_1058 | 51516..52880 [-], 1365 | 409249527 | hypothetical protein | TssA |
7 | SENTW_1059 (pmt1) | 52891..56400 [-], 3510 | 409249528 | hypothetical protein | TssM |
8 | SENTW_1060 (CAD) | 56419..57831 [-], 1413 | 409249529 | CAD protein Includes: Glutamine-dependent carbamoyl-phosphate synthase; Includes: RecName: Full=Aspartate carbamoyltransferase; Includes: RecName: Full=Dihydroorotase | TssA |
9 | SENTW_1061 | 57833..58570 [-], 738 | 409249530 | hypothetical protein | |
10 | SENTW_1062 (clpB1) | 58567..59184 [-], 618 | 409249531 | Chaperone protein clpB | TssH |
11 | SENTW_1063 (clpB3) | 59138..61303 [-], 2166 | 409249532 | Chaperone protein clpB | TssH |
12 | SENTW_1064 | 61316..62074 [-], 759 | 409249533 | hypothetical protein | TssL |
13 | SENTW_1065 | 62079..63410 [-], 1332 | 409249534 | hypothetical protein | TssK |
14 | SENTW_1066 | 63413..63946 [-], 534 | 409249535 | putative lipoprotein | TssJ |
15 | SENTW_1067 | 63943..65229 [-], 1287 | 409249536 | hypothetical protein | Fha |
16 | SENTW_1068 | 65254..66342 [-], 1089 | 409249537 | hypothetical protein | TssG |
17 | SENTW_1069 | 66306..68159 [-], 1854 | 409249538 | hypothetical protein | TssF |
18 | SENTW_1070 | 68164..68580 [-], 417 | 409249539 | hypothetical protein | TssE |
19 | SENTW_1071 | 68577..70049 [-], 1473 | 409249540 | hypothetical protein | TssC |
20 | SENTW_1072 | 70340..70852 [-], 513 | 409249541 | hypothetical protein | TssB |
21 | SENTW_1073 | 71131..71232 [-], 102 | 409249542 | hypothetical protein | |
22 | SENTW_1074 (hcp7) | 71471..71989 [+], 519 | 409249543 | Major exported protein Secreted protein hcp | TssD |
23 | SENTW_1075 (vgrG) | 72212..74353 [+], 2142 | 409249544 | A-kinase anchor protein 5 A-kinase anchor protein 150 kDa; AKAP 150; P150; cAMP-dependent protein kinase regulatory subunit II high affinity-binding protein | TssI |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
V. Investigation of the genomic context of the T6SS gene cluster.