SecReT6
I. Summary
SecReT6 ID768 insolico
StrainSalmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNT_187088
Location51021..74353
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number221121111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SENTW_1053 (yjhC)47004..48107 [+], 1104409249522putative oxidoreductase 
2SENTW_105448694..49152 [-], 459409249523hypothetical protein 
3SENTW_105549276..49647 [-], 372409249524hypothetical protein 
4SENTW_105650116..51006 [-], 891409249525hypothetical protein 
5SENTW_1057 (hcp5)51021..51500 [-], 480409249526Major exported protein Secreted protein hcp  TssD
6SENTW_105851516..52880 [-], 1365409249527hypothetical protein  TssA
7SENTW_1059 (pmt1)52891..56400 [-], 3510409249528hypothetical protein  TssM
8SENTW_1060 (CAD)56419..57831 [-], 1413409249529CAD protein Includes: Glutamine-dependent carbamoyl-phosphate synthase; Includes: RecName: Full=Aspartate carbamoyltransferase; Includes: RecName: Full=Dihydroorotase  TssA
9SENTW_106157833..58570 [-], 738409249530hypothetical protein 
10SENTW_1062 (clpB1)58567..59184 [-], 618409249531Chaperone protein clpB  TssH
11SENTW_1063 (clpB3)59138..61303 [-], 2166409249532Chaperone protein clpB  TssH
12SENTW_106461316..62074 [-], 759409249533hypothetical protein  TssL
13SENTW_106562079..63410 [-], 1332409249534hypothetical protein  TssK
14SENTW_106663413..63946 [-], 534409249535putative lipoprotein  TssJ
15SENTW_106763943..65229 [-], 1287409249536hypothetical protein  Fha
16SENTW_106865254..66342 [-], 1089409249537hypothetical protein  TssG
17SENTW_106966306..68159 [-], 1854409249538hypothetical protein  TssF
18SENTW_107068164..68580 [-], 417409249539hypothetical protein  TssE
19SENTW_107168577..70049 [-], 1473409249540hypothetical protein  TssC
20SENTW_107270340..70852 [-], 513409249541hypothetical protein  TssB
21SENTW_107371131..71232 [-], 102409249542hypothetical protein 
22SENTW_1074 (hcp7)71471..71989 [+], 519409249543Major exported protein Secreted protein hcp  TssD
23SENTW_1075 (vgrG)72212..74353 [+], 2142409249544A-kinase anchor protein 5 A-kinase anchor protein 150 kDa; AKAP 150; P150; cAMP-dependent protein kinase regulatory subunit II high affinity-binding protein  TssI
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Hcp , ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SENTW_326031566..32051 [-], 486409246843Protein hcp1 Hcp
2SENTW_1074(hcp7)71471..71989 [+], 519409249543Major exported protein Secreted protein hcp ABG57132

Download FASTA format files
Proteins        Genes
N/A
(1) Brankatschk K et al. (2012). Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars. Int J Food Microbiol. 155(3):247-56. [PudMed:22341936] in_silico
 
in_silico This literature contains bioinformatics investigation

Genomics & Bioinformatics Group in MML, SJTU