SecReT6
I. Summary
SecReT6 ID773 insolico
StrainFrancisella cf. novicida 3523
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017449
Location1405497..1430875
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FN3523_13731405497..1407959 [+], 2463387824956hypothetical protein  PdpA
2FN3523_13741407964..1411239 [+], 3276387824957hypothetical protein  PdpB
3FN3523_13751411232..1411609 [+], 378387824958hypothetical protein  IglE
4FN3523_13761411622..1412116 [+], 495387824959hypothetical protein  VgrG
5FN3523_13771412120..1413847 [+], 1728387824960hypothetical protein  IglF
6FN3523_13781413848..1414369 [+], 522387824961hypothetical protein  IglG
7FN3523_13791414382..1415815 [+], 1434387824962hypothetical protein  IglH
8FN3523_13801415828..1416454 [+], 627387824963hypothetical protein  DotU
9FN3523_13811416469..1417629 [+], 1161387824964hypothetical protein  IglI
10FN3523_13821417653..1418369 [+], 717387824965hypothetical protein  IglJ
11FN3523_13831418410..1422396 [+], 3987387824966pathogenicity determinant protein pdpC  PdpC
12FN3523_13841422414..1423004 [+], 591387824967hypothetical protein  PdpE
13FN3523_13851423114..1424310 [-], 1197387824968intracellular growth locus protein D  IglD
14FN3523_13861424331..1424960 [-], 630387824969IglC  IglC
15FN3523_13871424977..1426497 [-], 1521387824970hypothetical protein  IglB
16FN3523_13881426509..1427063 [-], 555387824971hypothetical protein  IglA
17FN3523_13891427141..1430875 [-], 3735387824972PdpD  PdpD
18FN3523_13901430975..1432090 [-], 1116387824973anhydro-N-acetylmuramic acid kinase 
19FN3523_13911432255..1433463 [+], 1209387824974Putative trehalose permease, MFS family, FucP subfamily 
20FN3523_13921433465..1434922 [+], 1458387824975Trehalase; Periplasmic trehalase precursor 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTN_1312 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FN3523_13761411622..1412116 [+], 495387824959hypothetical protein FTN_1312
2FN3523_13811416469..1417629 [+], 1161387824964hypothetical protein FTL_0118

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Proteins        Genes
N/A
N/A