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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | NE061598_09885 | 1773192..1775654 [+], 2463 | 385795485 | hypothetical protein | PdpA |
2 | NE061598_09890 | 1775659..1778940 [+], 3282 | 385795486 | hypothetical protein | PdpB |
3 | NE061598_09895 | 1778930..1779307 [+], 378 | 385795487 | lipoprotein | IglE |
4 | NE061598_09900 | 1779320..1779814 [+], 495 | 385795488 | hypothetical protein | VgrG |
5 | NE061598_09905 | 1779807..1781549 [+], 1743 | 385795489 | hypothetical protein | IglF |
6 | NE061598_09910 | 1781550..1782071 [+], 522 | 385795490 | hypothetical protein | IglG |
7 | NE061598_09915 | 1782084..1783514 [+], 1431 | 385795491 | hypothetical protein | IglH |
8 | NE061598_09920 | 1783527..1784150 [+], 624 | 385795492 | developmental protein, putative | DotU |
9 | NE061598_09925 | 1784172..1785323 [+], 1152 | 385795493 | hypothetical protein | IglI |
10 | NE061598_09930 | 1785289..1786062 [+], 774 | 385795494 | hypothetical protein | IglJ |
11 | NE061598_09935 | 1786102..1790088 [+], 3987 | 385795495 | hypothetical protein | PdpC |
12 | NE061598_09940 | 1790106..1790681 [+], 576 | 385795496 | hypothetical protein | PdpE |
13 | NE061598_09945 | 1790688..1791884 [-], 1197 | 385795497 | intracellular growth locus, subunit D | IglD |
14 | NE061598_09950 | 1791905..1792534 [-], 630 | 385795498 | intracellular growth locus, subunit C | IglC |
15 | NE061598_09955 | 1792551..1794071 [-], 1521 | 385795499 | intracellular growth locus, subunit B | IglB |
16 | NE061598_09960 | 1794085..1794639 [-], 555 | 385795500 | intracellular growth locus, subunit A | IglA |
17 | NE061598_09965 | 1794720..1798307 [-], 3588 | 385795501 | pathogenicity determinant protein D, pdpD | PdpD |
18 | NE061598_09990 | 1800663..1801079 [-], 417 | 385795502 | transposase | |
19 | NE061598_09995 | 1801067..1801447 [-], 381 | 385795503 | transposase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein