SecReT6
I. Summary
SecReT6 ID776 insolico
StrainFrancisella tularensis subsp. tularensis NE061598
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017453
Location1773192..1798307
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1NE061598_098851773192..1775654 [+], 2463385795485hypothetical protein  PdpA
2NE061598_098901775659..1778940 [+], 3282385795486hypothetical protein  PdpB
3NE061598_098951778930..1779307 [+], 378385795487lipoprotein  IglE
4NE061598_099001779320..1779814 [+], 495385795488hypothetical protein  VgrG
5NE061598_099051779807..1781549 [+], 1743385795489hypothetical protein  IglF
6NE061598_099101781550..1782071 [+], 522385795490hypothetical protein  IglG
7NE061598_099151782084..1783514 [+], 1431385795491hypothetical protein  IglH
8NE061598_099201783527..1784150 [+], 624385795492developmental protein, putative  DotU
9NE061598_099251784172..1785323 [+], 1152385795493hypothetical protein  IglI
10NE061598_099301785289..1786062 [+], 774385795494hypothetical protein  IglJ
11NE061598_099351786102..1790088 [+], 3987385795495hypothetical protein  PdpC
12NE061598_099401790106..1790681 [+], 576385795496hypothetical protein  PdpE
13NE061598_099451790688..1791884 [-], 1197385795497intracellular growth locus, subunit D  IglD
14NE061598_099501791905..1792534 [-], 630385795498intracellular growth locus, subunit C  IglC
15NE061598_099551792551..1794071 [-], 1521385795499intracellular growth locus, subunit B  IglB
16NE061598_099601794085..1794639 [-], 555385795500intracellular growth locus, subunit A  IglA
17NE061598_099651794720..1798307 [-], 3588385795501pathogenicity determinant protein D, pdpD  PdpD
18NE061598_099901800663..1801079 [-], 417385795502transposase 
19NE061598_099951801067..1801447 [-], 381385795503transposase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTT_1347 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1NE061598_099001779320..1779814 [+], 495385795488hypothetical protein FTT_1347
2NE061598_099251784172..1785323 [+], 1152385795493hypothetical protein FTL_0118

Download FASTA format files
Proteins        Genes
N/A
N/A