SecReT6
I. Summary
SecReT6 ID779 insolico
StrainFrancisella tularensis subsp. holarctica F92
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_019537
Location1093960..1115408
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1F92_063551089559..1090113 [-], 555423050834Alpha,alpha-trehalase 
2F92_063601089993..1091027 [-], 1035423050835trehalase, pseuodgene 
3F92_063651091014..1091271 [-], 258423050836hypothetical protein 
4F92_063701091419..1091799 [+], 381423050837transposase 
5F92_063751091787..1092299 [+], 513423050838transposase ISFtu1 
6F92_063801092300..1093172 [-], 873423050839hypothetical protein 
7F92_063951093960..1094514 [+], 555423050840intracellular growth locus subunit A  IglA
8F92_064001094528..1096048 [+], 1521423050841intracellular growth locus BII  IglB
9F92_064051096059..1096694 [+], 636423050842intracellular growth locus CII  IglC
10F92_064101096715..1097911 [+], 1197423050843intracellular growth locus DII  IglD
11F92_064151097918..1098493 [-], 576423050844hypothetical protein  PdpE
12F92_064201098511..1102497 [-], 3987423050845pathogenicity determinant protein PdpC  PdpC
13F92_064251102537..1103310 [-], 774423050846hypothetical protein  IglJ
14F92_064301103276..1104427 [-], 1152423050847hypothetical protein  IglI
15F92_064351104449..1105072 [-], 624423050848developmental protein, putative  DotU
16F92_064401105085..1106515 [-], 1431423050849hypothetical protein  IglH
17F92_064451106528..1107049 [-], 522423050850hypothetical protein  IglG
18F92_064501107117..1108781 [-], 1665423050851hypothetical protein  IglF
19F92_064551108786..1109280 [-], 495423050852hypothetical protein  VgrG
20F92_064601109293..1109670 [-], 378423050853lipoprotein  IglE
21F92_064651109660..1112941 [-], 3282423050854pathogenicity deteminant protein PdpB  PdpB
22F92_064701112946..1115408 [-], 2463423050855pathogenicity deteminant protein PdpA  PdpA
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTL_0118 , FTT_1347

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1F92_064301103276..1104427 [-], 1152423050847hypothetical protein FTL_0118
2F92_064551108786..1109280 [-], 495423050852hypothetical protein FTT_1347

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Proteins        Genes
N/A
N/A