I. Summary

SecReT6 ID	78
Strain	Photobacterium profundum SS9
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_006370
Location	716760..751056
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

14

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PBPRA0648	711865..712689 [-], 825	54307851	hypothetical protein
2	PBPRA0649	712682..714016 [-], 1335	54307852	hypothetical protein
3	PBPRA0650	714004..714702 [-], 699	54307853	ABC transporter ATP-binding protein
4	PBPRA0651	714789..715487 [-], 699	54307854	hypothetical protein
5	PBPRA0652	715750..716688 [+], 939	54307855	hypothetical protein
6	PBPRA0653	716760..717380 [-], 621	54307856	hypothetical protein
7	PBPRA0654	717589..718539 [+], 951	54307857	hypothetical protein
8	PBPRA0655	718443..718889 [+], 447	54307858	hypothetical protein
9	PBPRA0656	719070..719549 [+], 480	54307859	hypothetical protein
10	PBPRA0657	719613..721811 [-], 2199	54307860	serine/threonine protein kinase
11	PBPRA0658	721945..723255 [+], 1311	54307861	hypothetical protein	Fha
12	PBPRA0659	723258..723725 [+], 468	54307862	hypothetical protein	TssJ
13	PBPRA0660	723881..725206 [+], 1326	54307863	hypothetical protein	TssK
14	PBPRA0661	725233..726552 [+], 1320	54307864	hypothetical protein	TssL
15	PBPRA0662	726552..730097 [+], 3546	54307865	hypothetical protein	TssM
16	PBPRA0663	730052..730765 [+], 714	54307866	hypothetical protein
17	PBPRA0664	730681..731589 [+], 909	54307867	serine/threonine protein phosphatase
18	PBPRA0665	731589..732722 [+], 1134	54307868	hypothetical protein	TssA
19	PBPRA0666	732758..733291 [+], 534	54307869	hypothetical protein	TssB
20	PBPRA0667	733291..734781 [+], 1491	54307870	hypothetical protein	TssC
21	PBPRA0668	734842..736383 [+], 1542	54307871	hypothetical protein	TssC
22	PBPRA0669	736388..737182 [+], 795	54307872	hypothetical protein	TagJ
23	PBPRA0670	737337..737672 [+], 336	54307873	hypothetical protein	TssE
24	PBPRA0671	737674..739503 [+], 1830	54307874	hypothetical protein	TssF
25	PBPRA0672	739467..740471 [+], 1005	54307875	hypothetical protein	TssG
26	PBPRA0673	740336..743080 [+], 2745	54307876	ATPase with chaperone activity	TssH
27	PBPRA0674	743312..743791 [+], 480	54307877	hypothetical protein	TssD
28	PBPRA0675	743850..745700 [+], 1851	54307878	hypothetical protein	TssI
29	PBPRA0676	745739..746029 [+], 291	54307879	hypothetical protein	PAAR
30	PBPRA0677	746042..747007 [+], 966	54307880	hypothetical protein
31	PBPRA0678	746998..751056 [+], 4059	54307881	nucleotidyltransferase
32	PBPRA0679	751084..751689 [+], 606	54307882	hypothetical protein
33	PBPRA0680	751807..753405 [+], 1599	54307883	hypothetical protein
34	PBPRA0681	753398..753751 [+], 354	54307884	hypothetical protein
35	PBPRA0682	754269..754553 [+], 285	54307885	hypothetical protein
36	PBPRA0683	754813..755766 [+], 954	54307886	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

VPA1027

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	PBPRA0674	743312..743791 [+], 480	54307877	hypothetical protein	VPA1027

Download FASTA format files

Proteins        Genes

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

This literature contains bioinformatics investigation