 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | CMR15_mp10703 | 815883..816941 [-], 1059 | 410684611 | conserved hypothethical protein | |
2 | CMR15_mp10704 | 816973..818031 [-], 1059 | 410684612 | conserved hypothethical protein | |
3 | CMR15_mp10705 | 818057..819127 [-], 1071 | 410684613 | conserved hypothethical protein | |
4 | CMR15_mp10706 | 819139..820689 [-], 1551 | 410684614 | conserved hypothethical protein | |
5 | CMR15_mp10707 | 820709..823510 [-], 2802 | 410684615 | conserved hypothethical protein, Rhs element Vgr related protein | TssI |
6 | CMR15_mp10708 | 823569..824360 [-], 792 | 410684616 | putative secretion system protein (EvpN-like) | TssL |
7 | CMR15_mp10709 | 824357..825703 [-], 1347 | 410684617 | conserved hypothethical protein | TssK |
8 | CMR15_mp10710 | 825747..826421 [-], 675 | 410684618 | conserved exported protein of unknown function | TssJ |
9 | CMR15_mp10711 | 826408..826578 [-], 171 | 410684619 | hypothetical protein | |
10 | CMR15_mp10712 | 826696..827343 [+], 648 | 410684620 | conserved exported protein of unknown function, partial TRP motif | |
11 | CMR15_mp10713 | 827380..827892 [+], 513 | 410684621 | conserved hypothethical protein DUF770 | TssB |
12 | CMR15_mp10714 | 827873..829375 [+], 1503 | 410684622 | conserved hypothethical protein | TssC |
13 | CMR15_mp10715 (sciK) | 829463..829966 [+], 504 | 410684623 | secretion system protein (EvpC-like), Hemolysin-coregulated protein | TssD |
14 | CMR15_mp10716 | 830027..830500 [+], 474 | 410684624 | putative secretion system protein (EvpE-like) | TssE |
15 | CMR15_mp10717 | 830563..832413 [+], 1851 | 410684625 | putative Type VI secretion protein (DUF879) | TssF |
16 | CMR15_mp10718 | 832377..833468 [+], 1092 | 410684626 | putative Type VI secretion protein, VC_A0111 family | TssG |
17 | CMR15_mp10719 (clpB) | 833501..836218 [+], 2718 | 410684627 | Chaperone clpB | TssH |
18 | CMR15_mp10720 | 836239..838995 [+], 2757 | 410684628 | putative Rhs element VGR-related protein | TssI |
19 | CMR15_mp10721 | 838992..840146 [+], 1155 | 410684629 | conserved hypothethical protein | |
20 | CMR15_mp10722 | 840124..842877 [+], 2754 | 410684630 | conserved hypothethical protein | |
21 | CMR15_mp10723 | 842861..843994 [+], 1134 | 410684631 | conserved hypothethical protein | |
22 | CMR15_mp10724 | 844089..844208 [+], 120 | 410684632 | conserved hypothethical protein | |
23 | CMR15_mp10725 | 844391..844798 [+], 408 | 410684633 | conserved exported protein of unknown function | |
24 | CMR15_mp10726 | 845053..846405 [+], 1353 | 410684634 | putative lipoprotein yddW precursor | |
25 | CMR15_mp10727 | 846537..847616 [+], 1080 | 410684635 | conserved hypothethical protein | TssA |
26 | CMR15_mp10728 | 847686..848651 [-], 966 | 410684636 | putative transmembrane protein | |
27 | CMR15_mp10729 | 848750..849589 [-], 840 | 410684637 | putative outer membrane protein; OmpA/MotB domain | TagL |
28 | CMR15_mp10730 | 849586..850572 [-], 987 | 410684638 | conserved hypothethical protein (signal transduction histidine kinase domain) | |
29 | CMR15_mp10731 | 850569..854480 [-], 3912 | 410684639 | putative secretion system protein (EvpO-like) | TssM |
30 | CMR15_mp10732 | 854518..855975 [-], 1458 | 410684640 | conserved transmembrane protein of unknown function | |
31 | CMR15_mp10733 | 856016..856285 [-], 270 | 410684641 | conserved hypothethical protein with PAAR_motif | PAAR |
32 | CMR15_mp10734 | 856325..857173 [-], 849 | 410684642 | putative carboxypeptidase | |
33 | CMR15_mp10735 | 857459..858205 [+], 747 | 410684643 | putative transmembrane protein | |
34 | CMR15_mp10736 | 858342..861362 [+], 3021 | 410684644 | conserved hypothethical protein, VGR related protein | TssI |
35 | CMR15_mp10737 | 861378..862784 [+], 1407 | 410684645 | putative hydrolase | |
36 | CMR15_mp10738 | 862856..863950 [-], 1095 | 410684646 | putative transposase | |
37 | CMR15_mp10740 | 865390..865671 [+], 282 | 410684647 | conserved exported protein of unknown function | |
38 | CMR15_mp10741 | 865803..866267 [+], 465 | 410684648 | membrane protein of unknown function | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein