I. Summary
SecReT6 ID784 insolico
StrainRalstonia solanacearum CMR15
Repliconplasmid CMR15_mp [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1CMR15_mp10703815883..816941 [-], 1059410684611conserved hypothethical protein 
2CMR15_mp10704816973..818031 [-], 1059410684612conserved hypothethical protein 
3CMR15_mp10705818057..819127 [-], 1071410684613conserved hypothethical protein 
4CMR15_mp10706819139..820689 [-], 1551410684614conserved hypothethical protein 
5CMR15_mp10707820709..823510 [-], 2802410684615conserved hypothethical protein, Rhs element Vgr related protein  TssI
6CMR15_mp10708823569..824360 [-], 792410684616putative secretion system protein (EvpN-like)  TssL
7CMR15_mp10709824357..825703 [-], 1347410684617conserved hypothethical protein  TssK
8CMR15_mp10710825747..826421 [-], 675410684618conserved exported protein of unknown function  TssJ
9CMR15_mp10711826408..826578 [-], 171410684619hypothetical protein 
10CMR15_mp10712826696..827343 [+], 648410684620conserved exported protein of unknown function, partial TRP motif 
11CMR15_mp10713827380..827892 [+], 513410684621conserved hypothethical protein DUF770  TssB
12CMR15_mp10714827873..829375 [+], 1503410684622conserved hypothethical protein  TssC
13CMR15_mp10715 (sciK)829463..829966 [+], 504410684623secretion system protein (EvpC-like), Hemolysin-coregulated protein  TssD
14CMR15_mp10716830027..830500 [+], 474410684624putative secretion system protein (EvpE-like)  TssE
15CMR15_mp10717830563..832413 [+], 1851410684625putative Type VI secretion protein (DUF879)  TssF
16CMR15_mp10718832377..833468 [+], 1092410684626putative Type VI secretion protein, VC_A0111 family  TssG
17CMR15_mp10719 (clpB)833501..836218 [+], 2718410684627Chaperone clpB  TssH
18CMR15_mp10720836239..838995 [+], 2757410684628putative Rhs element VGR-related protein  TssI
19CMR15_mp10721838992..840146 [+], 1155410684629conserved hypothethical protein 
20CMR15_mp10722840124..842877 [+], 2754410684630conserved hypothethical protein 
21CMR15_mp10723842861..843994 [+], 1134410684631conserved hypothethical protein 
22CMR15_mp10724844089..844208 [+], 120410684632conserved hypothethical protein 
23CMR15_mp10725844391..844798 [+], 408410684633conserved exported protein of unknown function 
24CMR15_mp10726845053..846405 [+], 1353410684634putative lipoprotein yddW precursor 
25CMR15_mp10727846537..847616 [+], 1080410684635conserved hypothethical protein  TssA
26CMR15_mp10728847686..848651 [-], 966410684636putative transmembrane protein 
27CMR15_mp10729848750..849589 [-], 840410684637putative outer membrane protein; OmpA/MotB domain  TagL
28CMR15_mp10730849586..850572 [-], 987410684638conserved hypothethical protein (signal transduction histidine kinase domain) 
29CMR15_mp10731850569..854480 [-], 3912410684639putative secretion system protein (EvpO-like)  TssM
30CMR15_mp10732854518..855975 [-], 1458410684640conserved transmembrane protein of unknown function 
31CMR15_mp10733856016..856285 [-], 270410684641conserved hypothethical protein with PAAR_motif  PAAR
32CMR15_mp10734856325..857173 [-], 849410684642putative carboxypeptidase 
33CMR15_mp10735857459..858205 [+], 747410684643putative transmembrane protein 
34CMR15_mp10736858342..861362 [+], 3021410684644conserved hypothethical protein, VGR related protein  TssI
35CMR15_mp10737861378..862784 [+], 1407410684645putative hydrolase 
36CMR15_mp10738862856..863950 [-], 1095410684646putative transposase 
37CMR15_mp10740865390..865671 [+], 282410684647conserved exported protein of unknown function 
38CMR15_mp10741865803..866267 [+], 465410684648membrane protein of unknown function 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1CMR15_mp10715(sciK)829463..829966 [+], 504410684623secretion system protein (EvpC-like), Hemolysin-coregulated protein RSp0745

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Proteins        Genes