 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SPA2465 | 2564946..2565227 [-], 282 | 56414580 | hypothetical protein | |
2 | SPA2466 | 2565453..2565650 [-], 198 | 56414581 | hypothetical protein | |
3 | SPA2467 | 2565703..2566017 [+], 315 | 56414582 | hypothetical protein | |
4 | SPA2469 | 2568786..2569097 [-], 312 | 56414583 | hypothetical protein | |
5 | SPA2470 | 2569117..2571960 [-], 2844 | 56414584 | Rhs-family protein | |
6 | SPA2471 | 2574363..2576609 [-], 2247 | 56414585 | hypothetical protein | TssI |
7 | SPA2472 | 2576641..2577102 [-], 462 | 56414586 | hypothetical protein | |
8 | SPA2473 | 2577104..2577847 [-], 744 | 56414587 | hypothetical protein | |
9 | SPA2474 | 2577932..2578393 [-], 462 | 56414588 | hypothetical protein | |
10 | SPA2475 | 2578378..2578848 [-], 471 | 56414589 | hypothetical protein | |
11 | SPA2476 | 2578952..2579425 [-], 474 | 56414590 | hypothetical protein | |
12 | SPA2478 | 2579922..2580689 [-], 768 | 56414591 | hypothetical protein | |
13 | SPA2479 | 2580689..2584549 [-], 3861 | 56414592 | hypothetical protein | TssM |
14 | SPA2480 | 2584583..2585014 [-], 432 | 56414593 | shiga-like toxin A subunit | |
15 | SPA2481 | 2585216..2585989 [-], 774 | 56414594 | hypothetical protein | |
16 | SPA2482 | 2585994..2587298 [-], 1305 | 56414595 | hypothetical protein | TssL |
17 | SPA2483 | 2587295..2588638 [-], 1344 | 56414596 | hypothetical protein | TssK |
18 | SPA2484 | 2588642..2589178 [-], 537 | 56414597 | lipoprotein | TssJ |
19 | SPA2485 | 2589246..2589731 [-], 486 | 56414598 | hypothetical protein | TssD |
20 | SPA2486 | 2589874..2590257 [-], 384 | 56414599 | periplasmic protein | STM0278 (i) |
21 | SPA2487 | 2590242..2590727 [-], 486 | 56414600 | cytoplasmic protein | STM0277 (e) |
22 | SPA2488 | 2590838..2590954 [-], 117 | 56414601 | hypothetical protein | |
23 | SPA2489 | 2591021..2591506 [-], 486 | 56414602 | hypothetical protein | TssD |
24 | SPA2490 | 2591758..2592090 [-], 333 | 56414603 | cytoplasmic protein | |
25 | SPA2491 | 2592217..2592342 [-], 126 | 56414604 | hypothetical protein | |
26 | SPA2492 | 2592670..2594178 [-], 1509 | 56414605 | hypothetical protein | TssC |
27 | SPA2493 | 2594202..2594744 [-], 543 | 56414606 | hypothetical protein | TssB |
28 | SPA2494 | 2594806..2595096 [-], 291 | 56414607 | hypothetical protein | |
29 | SPA2495 | 2595099..2595197 [-], 99 | 56414608 | hypothetical protein | |
30 | SPA2496 | 2595182..2597845 [-], 2664 | 56414609 | ClpB-like protein | TssH |
31 | SPA2497 | 2598133..2598204 [+], 72 | 56414610 | hypothetical protein | |
32 | SPA2499 | 2599102..2599926 [+], 825 | 56414611 | hypothetical protein | TagJ |
33 | SPA2500 | 2599923..2600417 [+], 495 | 56414612 | hypothetical protein | TssE |
34 | SPA2501 | 2600433..2602316 [+], 1884 | 56414613 | hypothetical protein | TssF |
35 | SPA2502 | 2602313..2603308 [+], 996 | 56414614 | hypothetical protein | TssG |
36 | SPA2503 | 2603319..2604362 [+], 1044 | 56414615 | cytoplasmic protein | TssA |
37 | SPA2505 (dnaQ) | 2604893..2605624 [-], 732 | 56414616 | DNA polymerase III subunit epsilon | |
38 | SPA2506 (rnhA) | 2605688..2606155 [+], 468 | 56414617 | ribonuclease H | |
39 | SPA2507 (yafS) | 2606152..2606874 [-], 723 | 56414618 | hypothetical protein | |
40 | SPA2508 (gloB) | 2606909..2607664 [+], 756 | 56414619 | hydroxyacylglutathione hydrolase | |
41 | SPA2509 (mltD) | 2607736..2609103 [+], 1368 | 56414620 | membrane-bound lytic murein transglycosylase D | |
42 | SPA2510 (yafE) | 2609159..2609929 [-], 771 | 56414621 | methyltransferase | |
43 | SPA2511 (yafD) | 2610007..2610786 [-], 780 | 56414622 | hypothetical protein | |
44 | SPA2512 | 2610939..2612114 [-], 1176 | 56414623 | drug efflux protein | |
45 | SPA2513 (yafC) | 2612219..2613133 [+], 915 | 56414624 | transcriptional regulator | |
46 | SPA2514 (dkgB) | 2613155..2613958 [-], 804 | 56414625 | 2,5-diketo-D-gluconate reductase B | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein