SecReT6
SecReT6 ID792 experimental
StrainAcinetobacter baumannii M2
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionKC432605
Location1..24537
CommentThe ability of Acinetobacter baumannii M2 to out-compete Escherichia coli was reliant upon the products of tssB and hcp.
Functionanti-bacterial;effector translocation;adherence
T6SS TypeType i; subtype i4b
experimental Experimental investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1-2..898 [+], 897507480522transcriptional regulator LysR family 
2- (asaA)1988..2668 [+], 681507480523hypothetical protein 
3- (tssB)2685..3188 [+], 504507480524hypothetical protein  TssB
4- (tssC)3181..4662 [+], 1482507480525hypothetical protein  TssC
5- (hcp)4712..5215 [+], 504507480526hypothetical protein  TssD
6- (tssE)5295..5771 [+], 477507480527hypothetical protein  TssE
7- (tssF)5788..7599 [+], 1812507480528ImpG  TssF
8- (tssG)7563..8561 [+], 999507480529hypothetical protein  TssG
9- (asaB)8558..9970 [+], 1413507480530hypothetical protein 
10- (tssM)10082..13840 [+], 3759507480531hypothetical protein  TssM
11- (tagF)13878..14861 [+], 984507480532hypothetical protein 
12- (tagN)14839..15606 [+], 768507480533outer membrane protein  TagL
13- (asaC)15623..15886 [+], 264507480534hypothetical protein  PAAR
14- (tssH)16104..18788 [+], 2685507480535ClpB  TssH
15- (tssA)18810..19904 [+], 1095507480536hypothetical protein  TssA
16- (tssK)19921..21285 [+], 1365507480537hypothetical protein  TssK
17- (tssL)21303..22109 [+], 807507480538putative transmembrane protein  TssL
18- (asaD)22220..22720 [+], 501507480539hypothetical protein 
19- (asaE)22887..23681 [+], 795507480540putative transmembrane protein 
20-23686..24537 [-], 852507480541transcriptional regulator LysR Family 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
   Hcp (AGM48620)
Homology effector (effector protein label, when available)
Homology immunity protein (immunity protein label, when available)
(1) Carruthers MD et al. (2013). Acinetobacter baumannii Utilizes a Type VI Secretion System for Bacterial Competition. PLoS One. 8(3):e59388. [PudMed:23527179] experimental
 
experimental This literature contains experimental investigation