SecReT6 ID | 794 |
Strain | Vibrio alginolyticus EPJS |
Replicon | chromosome [Browse all T6SS(s) in this replicon] |
Accession | FJ790777 |
Location | 1..31102 |
Comment | In-frame deletion of VEPGS_0008 resulted in obvious biofilm reduction and the complemented strain restored to the level of the wild-type strain. Besides, in-frame deletion of dotU1, VEPGS_0008 and ppkA2 abolished the swarming ability. |
Function | N/A |
T6SS Type | Type i; subtype i5 |
. |
Component | TssH | TssD | TssL | TssI | TssA | TssB | TssC | TssE | TssF |
Number | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 |
Component | TssG | TssJ | TssK | TssM |
Number | 1 | 0 | 1 | 1 |
 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | VEPGS_0601 | 192..452 [+], 261 | 225382167 | hypothetical protein | |
2 | VEPGS_0602 | 482..1288 [+], 807 | 225382168 | putative two-component response regulator | |
3 | VEPGS_0603 | 1687..2148 [+], 462 | 225382169 | Ser/Thr protein kinase | |
4 | VEPGS_0604 | 2219..2416 [-], 198 | 225382170 | hypothetical protein | |
5 | VEPGS_0605 | 2445..2780 [-], 336 | 225382171 | hypothetical protein | |
6 | VEPGS_0606 | 3227..5377 [-], 2151 | 225382172 | serine/threonine protein kinase | |
7 | VEPGS_0607 | 5690..6775 [+], 1086 | 225382173 | type VI secretion protein FHA-domain containing protein | Fha |
8 | VEPGS_0608 | 6921..7685 [+], 765 | 225791094 | hypothetical protein | Fha |
9 | VEPGS_0609 | 8163..9452 [+], 1290 | 225791095 | hypothetical protein | TssK |
10 | VEPGS_0610 | 9464..10756 [+], 1293 | 225382176 | hypothetical protein | TssL |
11 | VEPGS_0611 | 10773..14291 [+], 3519 | 225382177 | type VI secretion system IcmF-related protein | TssM |
12 | VEPGS_0612 | 14273..14968 [+], 696 | 225382178 | hypothetical protein | |
13 | VEPGS_0613 | 14978..15772 [+], 795 | 225382179 | serine/threonine protein phosphatase | |
14 | VEPGS_0614 | 15765..16880 [+], 1116 | 225382180 | hypothetical protein | TssA |
15 | VEPGS_0615 | 16896..17426 [+], 531 | 225382181 | hypothetical protein | TssB |
16 | VEPGS_0616 | 17426..18919 [+], 1494 | 225382182 | hypothetical protein | TssC |
17 | VEPGS_0617 | 18984..20483 [+], 1500 | 225382183 | hypothetical protein | TssC |
18 | VEPGS_0618 | 20494..21288 [+], 795 | 225382184 | hypothetical protein | TagJ |
19 | VEPGS_0619 | 21296..21760 [+], 465 | 225382185 | hypothetical protein | TssE |
20 | VEPGS_0620 | 21757..23580 [+], 1824 | 225382186 | hypothetical protein | TssF |
21 | VEPGS_0621 | 23577..24245 [+], 669 | 225382187 | hypothetical protein | TssG |
22 | VEPGS_0622 | 24552..27119 [+], 2568 | 225382188 | putative ClpA/B-type chaperone | TssH |
23 | VEPGS_0623 | 27328..27807 [+], 480 | 225382189 | uncharacterized hemolysin-coregulated protein | TssD |
24 | VEPGS_0624 | 27857..28789 [+], 933 | 225382190 | Rhs element Vgr protein | TssI |
25 | VEPGS_0625 | 28759..29784 [+], 1026 | 225791096 | hypothetical protein | TssI |
26 | VEPGS_0626 | 30087..30926 [+], 840 | 225382192 | hypothetical protein | |
|

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
V. Investigation of the genomic context of the T6SS gene cluster.