I. Summary
SecReT6 ID795 insolico
StrainEscherichia coli LF82
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1LF82_0862 (gloB)237962..238717 [-], 756222155032hydroxyacylglutathione hydrolase 
2LF82_2504 (yafS)238751..239473 [+], 723222155033hypothetical protein 
3LF82_1911 (rnhA)239470..239937 [-], 468222155034ribonuclease HI 
4LF82_0509 (dnaQ)240002..240733 [+], 732222155035DNA polymerase III subunit epsilon 
5LF82_2505 (yafT)241272..242057 [+], 786222155036lipoprotein yafT 
6LF82_013242397..242876 [-], 480222155037hypothetical protein  TssD
7LF82_014242894..244252 [-], 1359222155038hypothetical protein  TssA
8LF82_015244263..247751 [-], 3489222155039hypothetical protein  TssM
9LF82_016247807..249249 [-], 1443222155040hypothetical protein  TssA
10LF82_017249254..249997 [-], 744222155041hypothetical protein 
11LF82_018249994..252756 [-], 2763222155042hypothetical protein  TssH
12LF82_019252766..253530 [-], 765222155043hypothetical protein  TssL
13LF82_020253535..254881 [-], 1347222155044hypothetical protein  TssK
14LF82_021254884..255408 [-], 525222155045hypothetical protein  TssJ
15LF82_022255405..256697 [-], 1293222155046hypothetical protein  Fha
16LF82_023256702..257751 [-], 1050222155047hypothetical protein  TssG
17LF82_024257715..259556 [-], 1842222155048hypothetical protein  TssF
18LF82_025259562..259987 [-], 426222155049hypothetical protein  TssE
19LF82_026259992..261476 [-], 1485222155050hypothetical protein  TssC
20LF82_027261499..262002 [-], 504222155051hypothetical protein  TssB
21LF82_028262708..263226 [+], 519222155052hypothetical protein  TssD
22LF82_029263447..265789 [+], 2343222155053hypothetical protein  TssI
23LF82_030265868..266767 [+], 900222155054hypothetical protein 
24LF82_031266780..267445 [+], 666222155055hypothetical protein 
25LF82_032268098..268748 [+], 651222155056receptor protein  PAAR
26LF82_033268767..270749 [+], 1983222155057hypothetical protein  TssI
27LF82_034270856..271902 [+], 1047222155058hypothetical protein 
28LF82_035271895..273334 [+], 1440222155059hypothetical protein  PAAR
29LF82_036273309..273599 [+], 291222155060hypothetical protein 
30LF82_749273857..274036 [+], 180387823186hypothetical protein 
31LF82_037274136..274621 [+], 486222155061yhhI transposase 
32LF82_038274850..275353 [+], 504222155062hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1LF82_028262708..263226 [+], 519222155052hypothetical protein Hcp

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Proteins        Genes
(1) Miquel S et al. (2010). Complete Genome Sequence of Crohn's Disease-Associated Adherent-Invasive E. coli Strain LF82. PLoS One. 5(9). [PudMed:20862302] in_silico
in_silico This literature contains bioinformatics investigation