SecReT6
I. Summary
SecReT6 ID799 insolico
StrainYersinia pestis Z176003
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014029
Location4185745..4189280
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number010001110
ComponentTssGTssJTssKTssM
Number0000
4
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPZ3_3263 (rbfA)4181413..4181823 [+], 411294505372ribosome-binding factor A 
2YPZ3_3264 (truB)4181823..4182797 [+], 975294505373tRNA pseudouridine synthase B 
3YPZ3_p24182919..4183188 [+], 27034251703830S ribosomal protein S15 
4YPZ3_32654183275..4183790 [+], 516294505374insertion element DNA-binding protein 
5YPZ3_32664183844..4184629 [+], 786294505375IS1661 transposase 
6YPZ3_32674185745..4186185 [-], 441294505376hypothetical protein  TssE
7YPZ3_32684186192..4187673 [-], 1482294505377hypothetical protein  TssC
8YPZ3_32694187741..4188238 [-], 498294505378hypothetical protein  TssB
9YPZ3_32704188762..4189280 [+], 519294505379hypothetical protein  TssD
10YPZ3_32714190181..4191092 [-], 912294505380maltose operon periplasmic protein 
11YPZ3_3272 (lamB)4191333..4192604 [-], 1272294505381maltoporin 
12YPZ3_3273 (malK)4192675..4193784 [-], 1110294505382maltose/maltodextrin transport ATP-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPZ3_32704188762..4189280 [+], 519294505379hypothetical protein ECA2866

Download FASTA format files
Proteins        Genes
N/A
N/A