I. Summary

SecReT6 ID	799
Strain	Yersinia pestis Z176003
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_014029
Location	4185745..4189280
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	0	0	0	1	1	1	0
Component	TssG	TssJ	TssK	TssM
Number	0	0	0	0

4

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YPZ3_3263 (rbfA)	4181413..4181823 [+], 411	294505372	ribosome-binding factor A
2	YPZ3_3264 (truB)	4181823..4182797 [+], 975	294505373	tRNA pseudouridine synthase B
3	YPZ3_p2	4182919..4183188 [+], 270	342517038	30S ribosomal protein S15
4	YPZ3_3265	4183275..4183790 [+], 516	294505374	insertion element DNA-binding protein
5	YPZ3_3266	4183844..4184629 [+], 786	294505375	IS1661 transposase
6	YPZ3_3267	4185745..4186185 [-], 441	294505376	hypothetical protein	TssE
7	YPZ3_3268	4186192..4187673 [-], 1482	294505377	hypothetical protein	TssC
8	YPZ3_3269	4187741..4188238 [-], 498	294505378	hypothetical protein	TssB
9	YPZ3_3270	4188762..4189280 [+], 519	294505379	hypothetical protein	TssD
10	YPZ3_3271	4190181..4191092 [-], 912	294505380	maltose operon periplasmic protein
11	YPZ3_3272 (lamB)	4191333..4192604 [-], 1272	294505381	maltoporin
12	YPZ3_3273 (malK)	4192675..4193784 [-], 1110	294505382	maltose/maltodextrin transport ATP-binding protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ECA2866

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YPZ3_3270	4188762..4189280 [+], 519	294505379	hypothetical protein	ECA2866

Download FASTA format files

Proteins        Genes

N/A

N/A