SecReT6
I. Summary
SecReT6 ID800 insolico
StrainYersinia pestis D106004
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017154
Location4125829..4129364
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number010001110
ComponentTssGTssJTssKTssM
Number0000
4
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPD4_3255 (rbfA)4121497..4121907 [+], 411384123842ribosome-binding factor A 
2YPD4_3256 (truB)4121907..4122881 [+], 975384123843tRNA pseudouridine synthase B 
3YPD4_32574123359..4123874 [+], 516384123844insertion element DNA-binding protein 
4YPD4_32584123928..4124713 [+], 786384123845IS1661 transposase 
5YPD4_32594125829..4126227 [-], 399384123846hypothetical protein  TssE
6YPD4_32604126276..4127757 [-], 1482384123847hypothetical protein  TssC
7YPD4_32614127825..4128322 [-], 498384123848hypothetical protein  TssB
8YPD4_32624128846..4129364 [+], 519384123849hypothetical protein  TssD
9YPD4_32634130265..4131176 [-], 912384123850maltose operon periplasmic protein 
10YPD4_32644131417..4132607 [-], 1191384123851maltoporin 
11YPD4_3265 (malK)4132760..4133869 [-], 1110384123852maltose/maltodextrin transport ATP-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPD4_32624128846..4129364 [+], 519384123849hypothetical protein ABG57132

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Proteins        Genes
N/A
N/A