SecReT6
I. Summary
SecReT6 ID801 insolico
StrainYersinia pestis Angola
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_010159
Location4146737..4150272
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number010001110
ComponentTssGTssJTssKTssM
Number0000
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YpAngola_A39014144267..4144782 [+], 516162419975transposase 
2YpAngola_A39024144836..4145621 [+], 786162420315integrase core subunit 
3YpAngola_A39034146737..4147177 [-], 441162420998hypothetical protein  TssE
4YpAngola_A39044147184..4148665 [-], 1482162421457hypothetical protein  TssC
5YpAngola_A39054148733..4149230 [-], 498162420185hypothetical protein  TssB
6YpAngola_A39064149754..4150272 [+], 519162420722hypothetical protein  TssD
7YpAngola_A39084150324..4150440 [+], 117162418679hypothetical protein 
8YpAngola_A39074150424..4150702 [-], 279162418294hypothetical protein 
9YpAngola_A39094150778..4150936 [+], 159162421240hypothetical protein 
10YpAngola_A3910 (malM)4151173..4152084 [-], 912162418637maltose regulon periplasmic protein 
11YpAngola_A3911 (lamB)4152325..4153596 [-], 1272162420946maltoporin 
12YpAngola_A3912 (malK2)4153667..4154776 [-], 1110162421368maltose/maltodextrin transporter ATP-binding protein 
13YpAngola_A39134154822..4155037 [+], 216162421407hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YpAngola_A39064149754..4150272 [+], 519162420722hypothetical protein ECA2866

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Proteins        Genes
N/A
N/A