SecReT6
I. Summary
SecReT6 ID805 insolico
StrainKlebsiella pneumoniae subsp. rhinoscleromatis strain SB3432
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021232
Location2475192..2486798
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KPR_23742470252..2471142 [-], 891529987967hypothetical protein 
2KPR_23752471275..2472036 [+], 762529987968hypothetical protein 
3KPR_23762472253..2473785 [+], 1533529987969hypothetical protein 
4KPR_23772473984..2474550 [-], 567529987970hypothetical protein 
5KPR_23782475192..2475683 [+], 492529987971hypothetical protein  TssB
6KPR_23792475720..2477270 [+], 1551529987972hypothetical protein  TssC
7KPR_23802477280..2478623 [+], 1344529987973hypothetical protein  TssK
8KPR_23812478620..2479309 [+], 690529987974hypothetical protein  TssL
9KPR_23822479306..2481012 [+], 1707529987975hypothetical protein  TagL
10KPR_23832481017..2481508 [+], 492529987976hypothetical protein  TssD
11KPR_23842481773..2484427 [+], 2655529987977hypothetical protein  TssH
12KPR_23852484399..2486798 [+], 2400529987978hypothetical protein  TssI
13KPR_23862486802..2487578 [+], 777529987979hypothetical protein 
14KPR_23872487603..2487938 [+], 336529987980hypothetical protein 
15KPR_23882487923..2488132 [+], 210529987981hypothetical protein 
16KPR_23892488228..2488986 [+], 759529987982hypothetical protein 
17KPR_23902488855..2490075 [-], 1221529987983hypothetical protein 
18KPR_23912490109..2490921 [-], 813529987984hypothetical protein 
19KPR_23922490945..2491355 [-], 411529987985hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1KPR_23832481017..2481508 [+], 492529987976hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A