 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | NH44784_051271 | 5470714..5473887 [-], 3174 | 528986875 | COG1526: Uncharacterized protein required for formate dehydrogenase activity | |
2 | NH44784_051281 | 5473871..5474857 [-], 987 | 528986876 | hypothetical protein | |
3 | NH44784_051291 | 5474850..5477543 [-], 2694 | 528986877 | VgrG protein | TssI |
4 | NH44784_051301 | 5477560..5480244 [-], 2685 | 528986878 | ClpB protein | TssH |
5 | NH44784_051311 | 5480264..5481355 [-], 1092 | 528986879 | Uncharacterized protein ImpH/VasB | TssG |
6 | NH44784_051321 | 5481328..5483166 [-], 1839 | 528986880 | Protein ImpG/VasA | TssF |
7 | NH44784_051331 | 5483220..5483705 [-], 486 | 528986881 | Uncharacterized protein ImpF | TssE |
8 | NH44784_051341 | 5483776..5484279 [-], 504 | 528986882 | Uncharacterized protein ImpD | TssD |
9 | NH44784_051351 | 5484320..5485810 [-], 1491 | 528986883 | Uncharacterized protein ImpC | TssC |
10 | NH44784_051361 | 5485803..5486327 [-], 525 | 528986884 | Uncharacterized protein ImpB | TssB |
11 | NH44784_051371 | 5486395..5487027 [-], 633 | 528986885 | FOG: TPR repeat | |
12 | NH44784_051381 | 5487481..5487846 [+], 366 | 528986886 | hypothetical protein | TssJ |
13 | NH44784_051391 | 5487924..5489270 [+], 1347 | 528986887 | Uncharacterized protein ImpJ/VasE | TssK |
14 | NH44784_051401 | 5489329..5490108 [+], 780 | 528986888 | Probable transmembrane protein | TssL |
15 | NH44784_051411 | 5490134..5493289 [+], 3156 | 528986889 | VgrG protein | TssI |
16 | NH44784_051421 | 5493265..5495328 [+], 2064 | 528986890 | hypothetical protein | |
17 | NH44784_051431 | 5495309..5495950 [+], 642 | 528986891 | hypothetical protein | |
18 | NH44784_051441 | 5495963..5496658 [-], 696 | 528986892 | hypothetical protein | |
19 | NH44784_051451 | 5496748..5499048 [-], 2301 | 528986893 | FIG00464863: hypothetical protein | |
20 | NH44784_051461 | 5499041..5499808 [-], 768 | 528986894 | hypothetical protein | |
21 | NH44784_051471 | 5499813..5500790 [-], 978 | 528986895 | hypothetical protein | |
22 | NH44784_051481 | 5500801..5503677 [-], 2877 | 528986896 | VgrG protein | TssI |
23 | NH44784_051491 | 5503704..5504630 [-], 927 | 528986897 | Tail fiber protein | |
24 | NH44784_051501 | 5504948..5505673 [+], 726 | 528986898 | Probable transmembrane protein | |
25 | NH44784_051511 | 5505744..5506268 [+], 525 | 528986899 | PROBABLE TRANSMEMBRANE PROTEIN | |
26 | NH44784_051521 | 5506256..5507143 [+], 888 | 528986900 | Hypothetical Protein | |
27 | NH44784_051531 | 5507167..5510973 [+], 3807 | 528986901 | IcmF-related protein | TssM |
28 | NH44784_051541 | 5510970..5511953 [+], 984 | 528986902 | hypothetical protein | |
29 | NH44784_051551 | 5511956..5512750 [+], 795 | 528986903 | hypothetical protein | TagL |
30 | NH44784_051561 | 5512840..5513952 [-], 1113 | 528986904 | Uncharacterized protein ImpA | TssA |
31 | NH44784_051571 | 5514128..5514379 [+], 252 | 528986905 | Orf69 | |
32 | NH44784_051581 | 5514416..5515576 [+], 1161 | 528986906 | hypothetical protein | PAAR |
33 | NH44784_051591 | 5515663..5515908 [+], 246 | 528986907 | hypothetical protein | |
34 | NH44784_051601 | 5515909..5516700 [+], 792 | 528986908 | Methionine aminopeptidase | |
35 | NH44784_051611 | 5516801..5518021 [+], 1221 | 528986909 | MFS permease | |
36 | NH44784_051621 | 5518195..5518836 [+], 642 | 528986910 | Uncharacterized glutathione S-transferase-like protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein