SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	811
Strain	Pseudomonas putida NBRC 14164
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_021505
Location	2779356..2809342
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	2


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PP4_24390	2775232..2776197 [-], 966	512685496	putative transmembrane sensor
2	PP4_24400	2776194..2776703 [-], 510	512685497	putative RNA polymerase ECF-type sigma factor
3	PP4_24410	2776792..2779308 [-], 2517	512685498	putative UvrABC system protein A
4	PP4_24420	2779356..2780441 [-], 1086	512685499	putative type VI secretion system protein	TssA
5	PP4_24430 (hcp)	2780538..2781056 [-], 519	512685500	putative type VI secretion system effector Hcp	TssD
6	PP4_24440	2781200..2783695 [-], 2496	512685501	putative type VI secretion system protein	TssM
7	PP4_24450	2783692..2784600 [-], 909	512685502	hypothetical protein
8	PP4_24460	2784597..2788394 [-], 3798	512685503	putative type VI secretion system protein	TssM
9	PP4_24470	2788425..2789141 [-], 717	512685504	putative type VI secretion system protein	TssL
10	PP4_24480	2789138..2790481 [-], 1344	512685505	hypothetical protein	TssK
11	PP4_24490	2790478..2791200 [-], 723	512685506	putative type VI secretion system protein	TssJ
12	PP4_24500 (clpV)	2791225..2793822 [-], 2598	512685507	putative type VI secretion system ATPase	TssH
13	PP4_24510	2793819..2794808 [-], 990	512685508	hypothetical protein	TssG
14	PP4_24520	2794853..2796673 [-], 1821	512685509	putative type VI secretion system protein	TssF
15	PP4_24530	2796673..2797155 [-], 483	512685510	putative type VI secretion system protein	TssE
16	PP4_24540	2797182..2798684 [-], 1503	512685511	hypothetical protein	TssC
17	PP4_24550	2798699..2799274 [-], 576	512685512	hypothetical protein	TssB
18	PP4_24560	2799303..2800052 [-], 750	512685513	hypothetical protein
19	PP4_24570	2800576..2801127 [-], 552	512685514	hypothetical protein
20	PP4_24580	2801116..2801475 [+], 360	512685515	hypothetical protein
21	PP4_24590	2801592..2802707 [+], 1116	512685516	hypothetical protein
22	PP4_24600	2803667..2803984 [-], 318	512685517	hypothetical protein
23	PP4_24610	2804074..2804370 [-], 297	512685518	hypothetical protein
24	PP4_24620	2804367..2804966 [-], 600	512685519	hypothetical protein
25	PP4_24630	2804993..2805304 [-], 312	512685520	hypothetical protein
26	PP4_24640	2805313..2806824 [-], 1512	512685521	hypothetical protein
27	PP4_24650	2806898..2807215 [+], 318	512685522	hypothetical protein
28	PP4_24660 (vgrG)	2807486..2809342 [+], 1857	512685523	putative type VI secretion system effector VgrG	TssI
29	PP4_24670	2809353..2809937 [+], 585	512685524	hypothetical protein
30	PP4_24680	2809971..2810435 [+], 465	512685525	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

Psyr_4965

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	PP4_24430(hcp)	2780538..2781056 [-], 519	512685500	putative type VI secretion system effector Hcp	Psyr_4965

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Proteins Genes

N/A