 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PP4_24390 | 2775232..2776197 [-], 966 | 512685496 | putative transmembrane sensor | |
2 | PP4_24400 | 2776194..2776703 [-], 510 | 512685497 | putative RNA polymerase ECF-type sigma factor | |
3 | PP4_24410 | 2776792..2779308 [-], 2517 | 512685498 | putative UvrABC system protein A | |
4 | PP4_24420 | 2779356..2780441 [-], 1086 | 512685499 | putative type VI secretion system protein | TssA |
5 | PP4_24430 (hcp) | 2780538..2781056 [-], 519 | 512685500 | putative type VI secretion system effector Hcp | TssD |
6 | PP4_24440 | 2781200..2783695 [-], 2496 | 512685501 | putative type VI secretion system protein | TssM |
7 | PP4_24450 | 2783692..2784600 [-], 909 | 512685502 | hypothetical protein | |
8 | PP4_24460 | 2784597..2788394 [-], 3798 | 512685503 | putative type VI secretion system protein | TssM |
9 | PP4_24470 | 2788425..2789141 [-], 717 | 512685504 | putative type VI secretion system protein | TssL |
10 | PP4_24480 | 2789138..2790481 [-], 1344 | 512685505 | hypothetical protein | TssK |
11 | PP4_24490 | 2790478..2791200 [-], 723 | 512685506 | putative type VI secretion system protein | TssJ |
12 | PP4_24500 (clpV) | 2791225..2793822 [-], 2598 | 512685507 | putative type VI secretion system ATPase | TssH |
13 | PP4_24510 | 2793819..2794808 [-], 990 | 512685508 | hypothetical protein | TssG |
14 | PP4_24520 | 2794853..2796673 [-], 1821 | 512685509 | putative type VI secretion system protein | TssF |
15 | PP4_24530 | 2796673..2797155 [-], 483 | 512685510 | putative type VI secretion system protein | TssE |
16 | PP4_24540 | 2797182..2798684 [-], 1503 | 512685511 | hypothetical protein | TssC |
17 | PP4_24550 | 2798699..2799274 [-], 576 | 512685512 | hypothetical protein | TssB |
18 | PP4_24560 | 2799303..2800052 [-], 750 | 512685513 | hypothetical protein | |
19 | PP4_24570 | 2800576..2801127 [-], 552 | 512685514 | hypothetical protein | |
20 | PP4_24580 | 2801116..2801475 [+], 360 | 512685515 | hypothetical protein | |
21 | PP4_24590 | 2801592..2802707 [+], 1116 | 512685516 | hypothetical protein | |
22 | PP4_24600 | 2803667..2803984 [-], 318 | 512685517 | hypothetical protein | |
23 | PP4_24610 | 2804074..2804370 [-], 297 | 512685518 | hypothetical protein | |
24 | PP4_24620 | 2804367..2804966 [-], 600 | 512685519 | hypothetical protein | |
25 | PP4_24630 | 2804993..2805304 [-], 312 | 512685520 | hypothetical protein | |
26 | PP4_24640 | 2805313..2806824 [-], 1512 | 512685521 | hypothetical protein | |
27 | PP4_24650 | 2806898..2807215 [+], 318 | 512685522 | hypothetical protein | |
28 | PP4_24660 (vgrG) | 2807486..2809342 [+], 1857 | 512685523 | putative type VI secretion system effector VgrG | TssI |
29 | PP4_24670 | 2809353..2809937 [+], 585 | 512685524 | hypothetical protein | |
30 | PP4_24680 | 2809971..2810435 [+], 465 | 512685525 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein