I. Summary

SecReT6 ID	814
Strain	Pseudomonas aeruginosa RP73
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_021577
Location	2649983..2669944
Comment
Function	N/A
T6SS Type	Type i; subtype i4a
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	M062_12280	2645197..2646381 [-], 1185	514409680	monooxygenase
2	M062_12285	2646411..2647556 [-], 1146	514409681	alkanesulfonate monooxygenase
3	M062_12290	2647566..2648126 [-], 561	514409682	FMN reductase
4	M062_12295	2648286..2648552 [-], 267	514413043	hypothetical protein
5	M062_12300	2648788..2649873 [-], 1086	514409683	Fis family transcriptional regulator	Sfa3
6	M062_12305	2649983..2651083 [-], 1101	514409684	type VI secretion protein	TssA
7	M062_12310	2651080..2654895 [-], 3816	514409685	type VI secretion system protein ImpL	TssM
8	M062_12315	2654892..2655650 [-], 759	514413044	type VI secretion system protein ImpK	TssL
9	M062_12320	2655668..2656960 [-], 1293	514413045	type VI secretion protein	TssK
10	M062_12325	2657059..2657535 [-], 477	514409686	type VI secretion protein
11	M062_12330	2657744..2658289 [+], 546	514409687	type VI secretion protein	TssB
12	M062_12335	2658312..2659796 [+], 1485	514409688	EvpB family type VI secretion protein	TssC
13	M062_12340	2659870..2660367 [+], 498	514409689	hypothetical protein	TssD
14	M062_12345	2660380..2660805 [+], 426	514409690	type VI secretion protein	TssE
15	M062_12350	2660789..2662582 [+], 1794	514409691	type VI secretion system protein ImpG	TssF
16	M062_12355	2662546..2663562 [+], 1017	514409692	type VI secretion protein	TssG
17	M062_12360	2663564..2666113 [+], 2550	514409693	ATPase	TssH
18	M062_12365	2666204..2667079 [+], 876	514413046	hypothetical protein
19	M062_12370	2667149..2667934 [+], 786	514413047	hypothetical protein
20	M062_12375	2667941..2669944 [+], 2004	514409694	type IV secretion protein Rhs	TssI
21	M062_12380	2669955..2670491 [+], 537	514409695	hypothetical protein
22	M062_12385	2670514..2670909 [-], 396	514409696	hypothetical protein
23	M062_12390	2671186..2671827 [+], 642	514409697	transcriptional regulator
24	M062_12395	2671959..2673233 [+], 1275	514409698	ABC transporter permease
25	M062_12400	2673240..2673353 [+], 114	514413048	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

PA5089

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	M062_26790	5796270..5798507 [-], 2238	514412207	hypothetical protein	PA5089

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Proteins        Genes

N/A

N/A