I. Summary

SecReT6 ID	815
Strain	Sorangium cellulosum So0157-2
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_021658
Location	8611519..8636680
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	2	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

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III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	SCE1572_30290	8607938..8609062 [-], 1125	521459472	hypothetical protein
2	SCE1572_30295	8609047..8610201 [-], 1155	521465251	hypothetical protein
3	SCE1572_30300	8610756..8611346 [-], 591	521465252	hypothetical protein
4	SCE1572_30305	8611519..8613003 [-], 1485	521459473	type VI secretion protein	TssC
5	SCE1572_30310	8613007..8613498 [-], 492	521459474	hypothetical protein	TssB
6	SCE1572_30315	8613517..8613651 [-], 135	521465253	hypothetical protein
7	SCE1572_30320	8613678..8615360 [-], 1683	521465254	hypothetical protein	TssA
8	SCE1572_30325	8615480..8616499 [-], 1020	521465255	hypothetical protein
9	SCE1572_30330	8616790..8620506 [-], 3717	521465256	hypothetical protein	TssM
10	SCE1572_30335	8620549..8621226 [-], 678	521465257	hypothetical protein	TssL
11	SCE1572_30340	8621261..8622622 [-], 1362	521465258	hypothetical protein	TssK
12	SCE1572_30345	8622772..8623563 [-], 792	521465259	hypothetical protein	TssJ
13	SCE1572_30350	8623627..8626326 [-], 2700	521459475	ATPase AAA	TssH
14	SCE1572_30355	8626364..8628229 [-], 1866	521465260	hypothetical protein
15	SCE1572_30360	8629933..8630499 [+], 567	521465261	hypothetical protein
16	SCE1572_30365	8630717..8631634 [-], 918	521465262	hypothetical protein
17	SCE1572_30370	8632161..8632640 [+], 480	521465263	hypothetical protein	TssD
18	SCE1572_30375	8632920..8633270 [+], 351	521465264	hypothetical protein	TssD
19	SCE1572_30380	8633318..8633740 [+], 423	521465265	hypothetical protein	TssE
20	SCE1572_30385	8633814..8635583 [+], 1770	521465266	hypothetical protein	TssF
21	SCE1572_30390	8635547..8636680 [+], 1134	521465267	hypothetical protein	TssG
22	SCE1572_30395	8636701..8637381 [-], 681	521465268	hypothetical protein
23	SCE1572_30400	8637550..8638254 [+], 705	521465269	hypothetical protein
24	SCE1572_30405	8640295..8640564 [+], 270	521465270	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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