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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | BJAB07104_RS07400 | 1528558..1529439 [-], 882 | 446922835 | ABC transporter ATP-binding protein | |
2 | BJAB07104_RS07405 | 1529439..1530383 [-], 945 | 446464671 | ABC transporter permease | |
3 | BJAB07104_RS07410 | 1530479..1530880 [-], 402 | 445992937 | hypothetical protein | |
4 | BJAB07104_RS07415 | 1531969..1532661 [+], 693 | 446792453 | hypothetical protein | |
5 | BJAB07104_RS07420 (tssB) | 1532678..1533181 [+], 504 | 447041786 | type VI secretion system contractile sheath small subunit | TssB |
6 | BJAB07104_RS07425 (tssC) | 1533174..1534655 [+], 1482 | 446989267 | type VI secretion system contractile sheath large subunit | TssC |
7 | BJAB07104_RS07430 | 1534705..1535208 [+], 504 | 446575849 | type VI secretion system tube protein Hcp | TssD |
8 | BJAB07104_RS07435 (tssE) | 1535288..1535764 [+], 477 | 446969775 | type VI secretion system baseplate subunit TssE | TssE |
9 | BJAB07104_RS07440 (tssF) | 1535781..1537592 [+], 1812 | 446490978 | type VI secretion system baseplate subunit TssF | TssF |
10 | BJAB07104_RS07445 (tssG) | 1537556..1538554 [+], 999 | 523534046 | type VI secretion system baseplate subunit TssG | TssG |
11 | BJAB07104_RS07450 | 1538551..1539963 [+], 1413 | 446514536 | hypothetical protein | |
12 | BJAB07104_RS07455 (tssM) | 1539994..1543818 [+], 3825 | 446479060 | type VI secretion system membrane subunit TssM | TssM |
13 | BJAB07104_RS07460 (tagF) | 1543856..1544815 [+], 960 | 446479387 | type VI secretion system-associated protein TagF | |
14 | BJAB07104_RS07465 | 1544818..1545585 [+], 768 | 446995154 | OmpA family protein | |
15 | BJAB07104_RS07470 | 1545602..1545865 [+], 264 | 446090257 | PAAR domain-containing protein | |
16 | BJAB07104_RS07475 (tssH) | 1546085..1548766 [+], 2682 | 487927950 | type VI secretion system ATPase TssH | TssH |
17 | BJAB07104_RS07480 (tssA) | 1548790..1549884 [+], 1095 | 445942858 | type VI secretion system protein TssA | TssA |
18 | BJAB07104_RS07485 (tssK) | 1549901..1551265 [+], 1365 | 446393590 | type VI secretion system baseplate subunit TssK | TssK |
19 | BJAB07104_RS07490 | 1551283..1552089 [+], 807 | 446005770 | type IVB secretion system protein IcmH/DotU | TssL |
20 | BJAB07104_RS07495 | 1552102..1552704 [+], 603 | 445968596 | hypothetical protein | |
21 | BJAB07104_RS07500 | 1552712..1553665 [+], 954 | 446895327 | M15 family metallopeptidase | |
22 | BJAB07104_RS07505 | 1553668..1554519 [-], 852 | 446382329 | LysR family transcriptional regulator | |
23 | BJAB07104_RS07510 | 1554692..1555339 [+], 648 | 1190339449 | ankyrin repeat domain-containing protein | |
24 | BJAB07104_RS07515 | 1555355..1555837 [+], 483 | 446569383 | nucleoside deaminase | |
25 | BJAB07104_RS07520 | 1555837..1557015 [+], 1179 | 446736559 | cyanate transporter | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein