SecReT6
I. Summary
SecReT6 ID816 insolico
StrainAcinetobacter baumannii BJAB07104
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021726
Location1532678..1552089
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BJAB07104_014551528558..1529439 [-], 882523522839ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 
2BJAB07104_014561529439..1530383 [-], 945523522840ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 
3BJAB07104_014571530479..1530880 [-], 402523522841hypothetical protein 
4BJAB07104_014581531969..1532661 [+], 693523522842hypothetical protein 
5BJAB07104_014591532678..1533181 [+], 504523522843hypothetical protein  TssB
6BJAB07104_014601533174..1534655 [+], 1482523522844hypothetical protein  TssC
7BJAB07104_014611534705..1535208 [+], 504523522845Hemolysin-coregulated protein (uncharacterized)  TssD
8BJAB07104_014621535288..1535764 [+], 477523522846hypothetical protein  TssE
9BJAB07104_014631535781..1537592 [+], 1812523522847hypothetical protein  TssF
10BJAB07104_014641537556..1538554 [+], 999523522848hypothetical protein  TssG
11BJAB07104_014651538551..1539963 [+], 1413523522849hypothetical protein 
12BJAB07104_014661539994..1543818 [+], 3825523522850hypothetical protein  TssM
13BJAB07104_014671543856..1544815 [+], 960523522851hypothetical protein 
14BJAB07104_014681544818..1545585 [+], 768523522852Outer membrane protein-related peptidoglycan-associated (lipo)protein  TagL
15BJAB07104_014691545602..1545865 [+], 264523522853hypothetical protein  PAAR
16BJAB07104_014701546085..1548766 [+], 2682523522854ATPases with chaperone activity, ATP-binding subunit  TssH
17BJAB07104_014711548790..1549884 [+], 1095523522855hypothetical protein  TssA
18BJAB07104_014721549901..1551265 [+], 1365523522856hypothetical protein  TssK
19BJAB07104_014731551283..1552089 [+], 807523522857hypothetical protein  TssL
20BJAB07104_014741552102..1552704 [+], 603523522858hypothetical protein 
21BJAB07104_014751552712..1553665 [+], 954523522859hypothetical protein 
22BJAB07104_014761553668..1554519 [-], 852523522860Transcriptional regulator 
23BJAB07104_014771554671..1555339 [+], 669523522861Ankyrin repeat protein 
24BJAB07104_014781555355..1555837 [+], 483523522862Cytosine/adenosine deaminase 
25BJAB07104_014791555837..1557015 [+], 1179523522863Cyanate permease 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BJAB07104_014611534705..1535208 [+], 504523522845Hemolysin-coregulated protein (uncharacterized) A1S_1296

Download FASTA format files
Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU