SecReT6
I. Summary
SecReT6 ID816 insolico
StrainAcinetobacter baumannii BJAB07104
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021726
Location1532678..1552089
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BJAB07104_RS074001528558..1529439 [-], 882446922835ABC transporter ATP-binding protein 
2BJAB07104_RS074051529439..1530383 [-], 945446464671ABC transporter permease 
3BJAB07104_RS074101530479..1530880 [-], 402445992937hypothetical protein 
4BJAB07104_RS074151531969..1532661 [+], 693446792453hypothetical protein 
5BJAB07104_RS07420 (tssB)1532678..1533181 [+], 504447041786type VI secretion system contractile sheath small subunit  TssB
6BJAB07104_RS07425 (tssC)1533174..1534655 [+], 1482446989267type VI secretion system contractile sheath large subunit  TssC
7BJAB07104_RS074301534705..1535208 [+], 504446575849type VI secretion system tube protein Hcp  TssD
8BJAB07104_RS07435 (tssE)1535288..1535764 [+], 477446969775type VI secretion system baseplate subunit TssE  TssE
9BJAB07104_RS07440 (tssF)1535781..1537592 [+], 1812446490978type VI secretion system baseplate subunit TssF  TssF
10BJAB07104_RS07445 (tssG)1537556..1538554 [+], 999523534046type VI secretion system baseplate subunit TssG  TssG
11BJAB07104_RS074501538551..1539963 [+], 1413446514536hypothetical protein 
12BJAB07104_RS07455 (tssM)1539994..1543818 [+], 3825446479060type VI secretion system membrane subunit TssM  TssM
13BJAB07104_RS07460 (tagF)1543856..1544815 [+], 960446479387type VI secretion system-associated protein TagF 
14BJAB07104_RS074651544818..1545585 [+], 768446995154OmpA family protein 
15BJAB07104_RS074701545602..1545865 [+], 264446090257PAAR domain-containing protein 
16BJAB07104_RS07475 (tssH)1546085..1548766 [+], 2682487927950type VI secretion system ATPase TssH  TssH
17BJAB07104_RS07480 (tssA)1548790..1549884 [+], 1095445942858type VI secretion system protein TssA  TssA
18BJAB07104_RS07485 (tssK)1549901..1551265 [+], 1365446393590type VI secretion system baseplate subunit TssK  TssK
19BJAB07104_RS074901551283..1552089 [+], 807446005770type IVB secretion system protein IcmH/DotU  TssL
20BJAB07104_RS074951552102..1552704 [+], 603445968596hypothetical protein 
21BJAB07104_RS075001552712..1553665 [+], 954446895327M15 family metallopeptidase 
22BJAB07104_RS075051553668..1554519 [-], 852446382329LysR family transcriptional regulator 
23BJAB07104_RS075101554692..1555339 [+], 6481190339449ankyrin repeat domain-containing protein 
24BJAB07104_RS075151555355..1555837 [+], 483446569383nucleoside deaminase 
25BJAB07104_RS075201555837..1557015 [+], 1179446736559cyanate transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU