SecReT6
I. Summary
SecReT6 ID817 insolico
StrainAcinetobacter baumannii BJAB0868
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021729
Location1490989..1510400
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BJAB0868_RS070551486869..1487750 [-], 882446922835ABC transporter ATP-binding protein 
2BJAB0868_RS070601487750..1488694 [-], 945446464671ABC transporter permease 
3BJAB0868_RS070651488790..1489191 [-], 402445992937hypothetical protein 
4BJAB0868_RS070701490280..1490972 [+], 693446792453hypothetical protein 
5BJAB0868_RS07075 (tssB)1490989..1491492 [+], 504447041786type VI secretion system contractile sheath small subunit  TssB
6BJAB0868_RS07080 (tssC)1491485..1492966 [+], 1482446989267type VI secretion system contractile sheath large subunit  TssC
7BJAB0868_RS070851493016..1493519 [+], 504446575849type VI secretion system tube protein Hcp  TssD
8BJAB0868_RS07090 (tssE)1493599..1494075 [+], 477446969775type VI secretion system baseplate subunit TssE  TssE
9BJAB0868_RS07095 (tssF)1494092..1495903 [+], 1812446490978type VI secretion system baseplate subunit TssF  TssF
10BJAB0868_RS07100 (tssG)1495867..1496865 [+], 999447113139type VI secretion system baseplate subunit TssG  TssG
11BJAB0868_RS071051496862..1498274 [+], 1413446514536hypothetical protein 
12BJAB0868_RS07110 (tssM)1498305..1502129 [+], 3825446479060type VI secretion system membrane subunit TssM  TssM
13BJAB0868_RS07115 (tagF)1502167..1503126 [+], 960446479387type VI secretion system-associated protein TagF 
14BJAB0868_RS071201503129..1503896 [+], 768446995154OmpA family protein 
15BJAB0868_RS071251503913..1504176 [+], 264446090257PAAR domain-containing protein 
16BJAB0868_RS07130 (tssH)1504396..1507077 [+], 2682487927950type VI secretion system ATPase TssH  TssH
17BJAB0868_RS07135 (tssA)1507101..1508195 [+], 1095445942858type VI secretion system protein TssA  TssA
18BJAB0868_RS07140 (tssK)1508212..1509576 [+], 1365446393590type VI secretion system baseplate subunit TssK  TssK
19BJAB0868_RS071451509594..1510400 [+], 807446005770type IVB secretion system protein IcmH/DotU  TssL
20BJAB0868_RS071501510413..1511015 [+], 603445968596hypothetical protein 
21BJAB0868_RS071551511023..1511976 [+], 954446895327M15 family metallopeptidase 
22BJAB0868_RS071601511979..1512830 [-], 852446382329LysR family transcriptional regulator 
23BJAB0868_RS071651513003..1513650 [+], 6481190339449ankyrin repeat domain-containing protein 
24BJAB0868_RS071701513666..1514148 [+], 483446569383nucleoside deaminase 
25BJAB0868_RS071751514148..1515326 [+], 1179446736559cyanate transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A