SecReT6
I. Summary
SecReT6 ID818 insolico
StrainAcinetobacter baumannii BJAB0715
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021733
Location1542497..1574218
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BJAB0715_RS073451538955..1539977 [+], 1023446515542ABC transporter substrate-binding protein 
2BJAB0715_RS073501540029..1540910 [-], 882446922827ABC transporter ATP-binding protein 
3BJAB0715_RS073551540910..1541854 [-], 945446464675ABC transporter permease 
4BJAB0715_RS073601541950..1542351 [-], 402445965496hypothetical protein 
5BJAB0715_RS073651542497..1545127 [+], 2631523534667type VI secretion system tip protein VgrG 
6BJAB0715_RS073701545124..1546062 [+], 939445981625hypothetical protein 
7BJAB0715_RS073751546067..1548820 [+], 2754pseudogenehypothetical protein 
8BJAB0715_RS073801548822..1549598 [+], 777446787508hypothetical protein 
9BJAB0715_RS073851549602..1550078 [+], 477487935716hypothetical protein 
10BJAB0715_RS073901550092..1550385 [+], 294487963798hypothetical protein 
11BJAB0715_RS073951550389..1551171 [+], 783446445526hypothetical protein 
12BJAB0715_RS196901551188..1551523 [+], 336523534670sel1 repeat family protein 
13BJAB0715_RS196951551613..1552092 [+], 480523534671sel1 repeat family protein 
14BJAB0715_RS197001552351..1553356 [-], 1006pseudogeneSUMF1/EgtB/PvdO family nonheme iron enzyme 
15BJAB0715_RS074201554099..1554791 [+], 693446792454hypothetical protein 
16BJAB0715_RS07425 (tssB)1554808..1555311 [+], 504447041786type VI secretion system contractile sheath small subunit  TssB
17BJAB0715_RS07430 (tssC)1555304..1556785 [+], 1482446989267type VI secretion system contractile sheath large subunit  TssC
18BJAB0715_RS074351556835..1557338 [+], 504446575849type VI secretion system tube protein Hcp  TssD
19BJAB0715_RS07440 (tssE)1557418..1557894 [+], 477446969775type VI secretion system baseplate subunit TssE  TssE
20BJAB0715_RS07445 (tssF)1557911..1559722 [+], 1812523534674type VI secretion system baseplate subunit TssF  TssF
21BJAB0715_RS07450 (tssG)1559686..1560684 [+], 999523534675type VI secretion system baseplate subunit TssG  TssG
22BJAB0715_RS074551560681..1562093 [+], 1413523534676hypothetical protein 
23BJAB0715_RS07460 (tssM)1562124..1565948 [+], 3825446479065type VI secretion system membrane subunit TssM  TssM
24BJAB0715_RS07465 (tagF)1565986..1566945 [+], 960497206211type VI secretion system-associated protein TagF 
25BJAB0715_RS074701566948..1567715 [+], 768446995154OmpA family protein 
26BJAB0715_RS074751567732..1567995 [+], 264446090257PAAR domain-containing protein 
27BJAB0715_RS07480 (tssH)1568214..1570895 [+], 2682487935769type VI secretion system ATPase TssH  TssH
28BJAB0715_RS07485 (tssA)1570919..1572013 [+], 1095523534677type VI secretion system protein TssA  TssA
29BJAB0715_RS07490 (tssK)1572030..1573394 [+], 1365446393586type VI secretion system baseplate subunit TssK  TssK
30BJAB0715_RS074951573412..1574218 [+], 807446005774type IVB secretion system protein IcmH/DotU  TssL
31BJAB0715_RS075001574231..1574833 [+], 603523534678hypothetical protein 
32BJAB0715_RS075051574841..1575794 [+], 954446895327M15 family metallopeptidase 
33BJAB0715_RS075101575797..1576648 [-], 852446382331LysR family transcriptional regulator 
34BJAB0715_RS075151576821..1577468 [+], 6481268178513ankyrin repeat domain-containing protein 
35BJAB0715_RS075201577484..1577969 [+], 486446569381nucleoside deaminase 
36BJAB0715_RS075251577969..1579147 [+], 1179523534680cyanate transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A