 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | F504_4447 | 1232840..1233121 [-], 282 | 525711913 | putative signal peptide protein | |
2 | F504_4448 | 1233239..1234282 [-], 1044 | 525711914 | hypothetical protein | |
3 | F504_4449 | 1234279..1235949 [-], 1671 | 525711915 | hypothetical protein | |
4 | F504_4450 (vgrG) | 1235965..1238985 [-], 3021 | 525711916 | VgrG protein | TssI |
5 | F504_4451 | 1239123..1239851 [-], 729 | 525711917 | putative transmembrane protein | |
6 | F504_4452 | 1240156..1241004 [+], 849 | 525711918 | putative transmembrane protein | |
7 | F504_4453 | 1241044..1241313 [+], 270 | 525711919 | hypothetical protein | PAAR |
8 | F504_4454 | 1241324..1242811 [+], 1488 | 525711920 | hypothetical protein | |
9 | F504_4455 | 1242849..1246778 [+], 3930 | 525711921 | IcmF-related protein | TssM |
10 | F504_4456 | 1246775..1247761 [+], 987 | 525711922 | hypothetical protein | |
11 | F504_4457 | 1247764..1248597 [+], 834 | 525711923 | Outer membrane protein | TagL |
12 | F504_4458 | 1248666..1249664 [+], 999 | 525711924 | putative transmembrane protein | |
13 | F504_4459 (impA) | 1249737..1250750 [-], 1014 | 525711925 | Uncharacterized protein ImpA | TssA |
14 | F504_4460 | 1250950..1252293 [-], 1344 | 525712617 | lipoprotein yddw | |
15 | F504_4461 | 1252349..1253041 [-], 693 | 525711926 | hypothetical protein | |
16 | F504_4462 | 1253046..1253423 [-], 378 | 525711927 | hypothetical protein | |
17 | F504_4463 | 1254610..1255398 [-], 789 | 525711928 | Hypothetical Protein | |
18 | F504_4464 | 1255480..1256265 [-], 786 | 525711929 | Hypothetical Protein | |
19 | F504_4465 | 1256423..1257409 [-], 987 | 525711930 | Mobile element protein | |
20 | F504_4466 | 1258286..1258447 [-], 162 | 525711931 | hypothetical protein | |
21 | F504_4467 | 1258418..1259725 [+], 1308 | 525711932 | Mobile element protein | |
22 | F504_4468 | 1259797..1260621 [+], 825 | 525711933 | Mobile element protein | |
23 | F504_4469 | 1260595..1262928 [-], 2334 | 525711934 | hypothetical protein | |
24 | F504_4470 | 1262906..1264060 [-], 1155 | 525711935 | hypothetical protein | |
25 | F504_4471 (vgrG) | 1264057..1266813 [-], 2757 | 525711936 | VgrG protein | TssI |
26 | F504_4472 (clpB) | 1266834..1269551 [-], 2718 | 525711937 | ClpB protein | TssH |
27 | F504_4473 | 1269584..1270642 [-], 1059 | 525711938 | Uncharacterized protein ImpH/VasB | TssG |
28 | F504_4474 | 1270639..1272489 [-], 1851 | 525711939 | Protein ImpG/VasA | TssF |
29 | F504_4475 (impF) | 1272552..1273025 [-], 474 | 525711940 | Uncharacterized protein ImpF | TssE |
30 | F504_4476 | 1273086..1273589 [-], 504 | 525711941 | Hypothetical Protein | TssD |
31 | F504_4477 (impC) | 1273678..1275168 [-], 1491 | 525711942 | Uncharacterized protein ImpC | TssC |
32 | F504_4478 (impB) | 1275161..1275673 [-], 513 | 525711943 | Uncharacterized protein ImpB | TssB |
33 | F504_4479 | 1275710..1276357 [-], 648 | 525711944 | TPR repeat protein | |
34 | F504_4480 | 1276725..1277306 [+], 582 | 525711945 | Type VI secretion lipoprotein/VasD | TssJ |
35 | F504_4481 | 1277350..1278696 [+], 1347 | 525711946 | Uncharacterized protein ImpJ/VasE | TssK |
36 | F504_4482 | 1278693..1279484 [+], 792 | 525711947 | putative transmembrane protein | TssL |
37 | F504_4483 | 1279543..1282335 [+], 2793 | 525711948 | VgrG protein | TssI |
38 | F504_4484 | 1282332..1283906 [+], 1575 | 525711949 | hypothetical protein | |
39 | F504_4485 | 1285005..1285922 [+], 918 | 525711950 | hypothetical protein | |
40 | F504_4486 | 1285941..1286828 [+], 888 | 525711951 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein