I. Summary

SecReT6 ID	819
Strain	Ralstonia solanacearum FQY_4
Replicon	megaplasmid [Browse all T6SS(s) in this replicon]
Accession	NC_021745
Location	1235965..1282335
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	3	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	F504_4447	1232840..1233121 [-], 282	525711913	putative signal peptide protein
2	F504_4448	1233239..1234282 [-], 1044	525711914	hypothetical protein
3	F504_4449	1234279..1235949 [-], 1671	525711915	hypothetical protein
4	F504_4450 (vgrG)	1235965..1238985 [-], 3021	525711916	VgrG protein	TssI
5	F504_4451	1239123..1239851 [-], 729	525711917	putative transmembrane protein
6	F504_4452	1240156..1241004 [+], 849	525711918	putative transmembrane protein
7	F504_4453	1241044..1241313 [+], 270	525711919	hypothetical protein	PAAR
8	F504_4454	1241324..1242811 [+], 1488	525711920	hypothetical protein
9	F504_4455	1242849..1246778 [+], 3930	525711921	IcmF-related protein	TssM
10	F504_4456	1246775..1247761 [+], 987	525711922	hypothetical protein
11	F504_4457	1247764..1248597 [+], 834	525711923	Outer membrane protein	TagL
12	F504_4458	1248666..1249664 [+], 999	525711924	putative transmembrane protein
13	F504_4459 (impA)	1249737..1250750 [-], 1014	525711925	Uncharacterized protein ImpA	TssA
14	F504_4460	1250950..1252293 [-], 1344	525712617	lipoprotein yddw
15	F504_4461	1252349..1253041 [-], 693	525711926	hypothetical protein
16	F504_4462	1253046..1253423 [-], 378	525711927	hypothetical protein
17	F504_4463	1254610..1255398 [-], 789	525711928	Hypothetical Protein
18	F504_4464	1255480..1256265 [-], 786	525711929	Hypothetical Protein
19	F504_4465	1256423..1257409 [-], 987	525711930	Mobile element protein
20	F504_4466	1258286..1258447 [-], 162	525711931	hypothetical protein
21	F504_4467	1258418..1259725 [+], 1308	525711932	Mobile element protein
22	F504_4468	1259797..1260621 [+], 825	525711933	Mobile element protein
23	F504_4469	1260595..1262928 [-], 2334	525711934	hypothetical protein
24	F504_4470	1262906..1264060 [-], 1155	525711935	hypothetical protein
25	F504_4471 (vgrG)	1264057..1266813 [-], 2757	525711936	VgrG protein	TssI
26	F504_4472 (clpB)	1266834..1269551 [-], 2718	525711937	ClpB protein	TssH
27	F504_4473	1269584..1270642 [-], 1059	525711938	Uncharacterized protein ImpH/VasB	TssG
28	F504_4474	1270639..1272489 [-], 1851	525711939	Protein ImpG/VasA	TssF
29	F504_4475 (impF)	1272552..1273025 [-], 474	525711940	Uncharacterized protein ImpF	TssE
30	F504_4476	1273086..1273589 [-], 504	525711941	Hypothetical Protein	TssD
31	F504_4477 (impC)	1273678..1275168 [-], 1491	525711942	Uncharacterized protein ImpC	TssC
32	F504_4478 (impB)	1275161..1275673 [-], 513	525711943	Uncharacterized protein ImpB	TssB
33	F504_4479	1275710..1276357 [-], 648	525711944	TPR repeat protein
34	F504_4480	1276725..1277306 [+], 582	525711945	Type VI secretion lipoprotein/VasD	TssJ
35	F504_4481	1277350..1278696 [+], 1347	525711946	Uncharacterized protein ImpJ/VasE	TssK
36	F504_4482	1278693..1279484 [+], 792	525711947	putative transmembrane protein	TssL
37	F504_4483	1279543..1282335 [+], 2793	525711948	VgrG protein	TssI
38	F504_4484	1282332..1283906 [+], 1575	525711949	hypothetical protein
39	F504_4485	1285005..1285922 [+], 918	525711950	hypothetical protein
40	F504_4486	1285941..1286828 [+], 888	525711951	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

RSp0745

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	F504_4476	1273086..1273589 [-], 504	525711941	Hypothetical Protein	RSp0745

Download FASTA format files

Proteins        Genes

N/A

N/A