I. Summary
SecReT6 ID82 insolico
StrainXanthomonas oryzae pv. oryzae KACC 10331
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XOO30263250458..3250799 [+], 34258582649IS1404 transposase 
2XOO30273250793..3251320 [+], 52858582650IS1404 transposase 
3XOO30283251283..3252068 [-], 78658582651transposase 
4XOO30293252116..3252754 [+], 63958582652Tn5044 transposase 
5XOO30303253076..3253855 [+], 78058582653VirG-like two component response regulator 
6XOO30313253852..3254844 [+], 99358582654cytochrome C peroxidase 
7XOO3032 (virA)3254841..3257300 [+], 246058582655two-component VirA-like sensor kinase 
8XOO30333257414..3258394 [+], 98158582656hypothetical protein 
9XOO30343258391..3259431 [+], 104158582657hypothetical protein  TssA
10XOO30353259927..3262830 [-], 290458582658serine/threonine kinase 
11XOO3036 (ptc1)3262827..3263549 [-], 72358582659phosphoprotein phosphatase 
12XOO30373263546..3264199 [-], 65458582660hypothetical protein 
13XOO30383264190..3267648 [-], 345958582661hypothetical protein  TssM
14XOO30393267652..3268968 [-], 131758582662hypothetical protein  TssL
15XOO30423271738..3272289 [-], 55258582665hypothetical protein 
16XOO30433272286..3274334 [-], 204958582666hypothetical protein  TssI
17XOO30443275021..3275272 [-], 25258582667IS1479 transposase 
18XOO3045 (clpB)3276579..3279377 [-], 279958582668chaperone ClpB  TssH
19XOO30463279317..3280357 [-], 104158582669hypothetical protein  TssG
20XOO30473280291..3282168 [-], 187858582670hypothetical protein  TssF
21XOO30483282172..3282675 [-], 50458582671hypothetical protein  TssE
22XOO30493282663..3283496 [-], 83458582672hypothetical protein  TagJ
23XOO30503283532..3284035 [-], 50458582673hypothetical protein  TssD
24XOO30513284135..3285706 [-], 157258582674hypothetical protein  TssC
25XOO30523285642..3286337 [-], 69658582675hypothetical protein  TssB
26XOO30533286670..3287311 [-], 64258582676hypothetical protein 
27XOO30543287507..3288475 [-], 96958582677transposase 
28XOO30563288624..3289262 [+], 63958582679transposase 
29XOO30603290771..3291826 [-], 105658582683hypothetical protein 
30XOO30613291851..3292588 [-], 73858582684hypothetical protein 
31XOO30623292619..3295672 [-], 305458582685hypothetical protein 
32XOO30633295691..3296038 [-], 34858582686IS1404 transposase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation