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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | SEEH1578_10390 (mltD) | 2100603..2101970 [-], 1368 | 525816127 | membrane-bound lytic murein transglycosylase D | |
2 | SEEH1578_10395 | 2102042..2102797 [-], 756 | 525816128 | hydroxyacylglutathione hydrolase | |
3 | SEEH1578_10400 | 2102832..2103554 [+], 723 | 525816129 | hypothetical protein | |
4 | SEEH1578_10405 (rnhA) | 2103551..2104018 [-], 468 | 525816130 | ribonuclease H | |
5 | SEEH1578_10410 | 2104082..2104813 [+], 732 | 525816131 | DNA polymerase III subunit epsilon | |
6 | SEEH1578_10415 | 2105147..2105254 [+], 108 | 525816132 | hypothetical protein | |
7 | SEEH1578_10420 | 2105345..2106400 [-], 1056 | 525816133 | putative cytoplasmic protein | TssA |
8 | SEEH1578_10425 | 2106411..2107406 [-], 996 | 525816134 | type VI secretion protein | TssG |
9 | SEEH1578_10430 | 2107403..2109286 [-], 1884 | 525816135 | Protein ImpG/VasA | TssF |
10 | SEEH1578_10435 | 2109302..2109796 [-], 495 | 525816136 | hypothetical protein | TssE |
11 | SEEH1578_10440 | 2109793..2110617 [-], 825 | 525816137 | Protein of avirulence locus ImpE | TagJ |
12 | SEEH1578_10445 | 2110604..2111506 [-], 903 | 525816138 | hypothetical protein | |
13 | SEEH1578_10450 | 2111874..2114513 [+], 2640 | 525816139 | ClpB protein | TssH |
14 | SEEH1578_10455 | 2114613..2115155 [+], 543 | 525816140 | hypothetical protein | TssB |
15 | SEEH1578_10460 | 2115179..2116687 [+], 1509 | 525816141 | Type VI protein secretion system | TssC |
16 | SEEH1578_10465 | 2116740..2117141 [+], 402 | 525816142 | hypothetical protein | STY0300 (e) |
17 | SEEH1578_10470 | 2117113..2117538 [+], 426 | 525816143 | hypothetical protein | STY0301 (i) |
18 | SEEH1578_10475 | 2117775..2118260 [+], 486 | 525816144 | Protein hcp1 | TssD |
19 | SEEH1578_10480 | 2118563..2119048 [+], 486 | 525816145 | Type VI secretion system-associated protein | STM0277 (e) |
20 | SEEH1578_10485 | 2119045..2119416 [+], 372 | 525816146 | putative periplasmic protein | STM0278 (i) |
21 | SEEH1578_10490 | 2119559..2120044 [+], 486 | 525816147 | Protein hcp1 | TssD |
22 | SEEH1578_10495 | 2120112..2120648 [+], 537 | 525816148 | hypothetical protein | TssJ |
23 | SEEH1578_10500 | 2120652..2121995 [+], 1344 | 525816149 | type VI secretion protein | TssK |
24 | SEEH1578_10505 | 2121992..2123296 [+], 1305 | 525816150 | hypothetical protein | TssL |
25 | SEEH1578_10510 | 2123301..2124074 [+], 774 | 525816151 | hypothetical protein | |
26 | SEEH1578_10515 | 2124352..2124708 [+], 357 | 525816152 | putative shiga-like toxin A subunit | |
27 | SEEH1578_10520 | 2124742..2128611 [+], 3870 | 525816153 | Type VI secretion protein IcmF | TssM |
28 | SEEH1578_10525 | 2128611..2129378 [+], 768 | 525816154 | type VI secretion system-associated protein | |
29 | SEEH1578_10530 | 2129421..2129891 [+], 471 | 525816155 | hypothetical protein | |
30 | SEEH1578_10535 | 2129876..2130337 [+], 462 | 525816156 | hypothetical protein | |
31 | SEEH1578_10540 | 2130346..2130468 [+], 123 | 525816157 | hypothetical protein | |
32 | SEEH1578_10545 | 2130465..2130881 [+], 417 | 525816158 | hypothetical protein | |
33 | SEEH1578_10550 | 2130908..2131426 [+], 519 | 525816159 | SPI-6 associated protein | |
34 | SEEH1578_10555 | 2131823..2134054 [+], 2232 | 525816160 | VgrG protein | TssI |
35 | SEEH1578_10560 | 2134114..2134572 [+], 459 | 525816161 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein