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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | CFSAN001921_15945 | 3229964..3230227 [-], 264 | 525841087 | hypothetical protein | |
2 | CFSAN001921_15950 | 3230221..3234315 [-], 4095 | 525841088 | type IV secretion protein Rhs | PAAR |
3 | CFSAN001921_15955 | 3234334..3234780 [-], 447 | 525839266 | hypothetical protein | |
4 | CFSAN001921_15960 | 3234804..3236993 [-], 2190 | 525839267 | type VI secretion protein Vgr | TssI |
5 | CFSAN001921_15965 | 3237390..3237908 [-], 519 | 525841089 | SPI-6 associated protein | |
6 | CFSAN001921_15970 | 3237935..3238321 [-], 387 | 525841090 | hypothetical protein | |
7 | CFSAN001921_15975 | 3238348..3239136 [-], 789 | 525839268 | hypothetical protein | |
8 | CFSAN001921_15980 | 3239136..3243005 [-], 3870 | 525839269 | membrane protein | TssM |
9 | CFSAN001921_15985 | 3243039..3243482 [-], 444 | 525839270 | Shiga toxin A subunit | |
10 | CFSAN001921_15990 | 3243673..3244446 [-], 774 | 525841091 | membrane protein | |
11 | CFSAN001921_15995 | 3244451..3245755 [-], 1305 | 525839271 | membrane protein | TssL |
12 | CFSAN001921_16000 | 3245752..3247095 [-], 1344 | 525839272 | type VI secretion protein | TssK |
13 | CFSAN001921_16005 | 3247099..3247635 [-], 537 | 525839273 | outer membrane lipoprotein | TssJ |
14 | CFSAN001921_16010 | 3247702..3248187 [-], 486 | 525839274 | Hcp1 family type VI secretion system effector | TssD |
15 | CFSAN001921_16015 | 3248330..3248713 [-], 384 | 525839275 | hypothetical protein | STM0278 (i) |
16 | CFSAN001921_16020 | 3248698..3249183 [-], 486 | 525839276 | hypothetical protein | STM0277 (e) |
17 | CFSAN001921_16025 | 3249488..3249973 [-], 486 | 525839277 | Hcp1 family type VI secretion system effector | TssD |
18 | CFSAN001921_16030 | 3250859..3252367 [-], 1509 | 525839278 | EvpB family type VI secretion protein | TssC |
19 | CFSAN001921_16035 | 3252391..3252933 [-], 543 | 525839279 | type VI secretion protein | TssB |
20 | CFSAN001921_16040 | 3253033..3255672 [-], 2640 | 525839280 | protein disaggregation chaperone | TssH |
21 | CFSAN001921_16045 | 3256040..3256942 [+], 903 | 525839281 | hypothetical protein | |
22 | CFSAN001921_16050 | 3256929..3257753 [+], 825 | 525839282 | hypothetical protein | TagJ |
23 | CFSAN001921_16055 | 3257750..3258244 [+], 495 | 525839283 | cytoplasmic protein | TssE |
24 | CFSAN001921_16060 | 3258260..3260143 [+], 1884 | 525841092 | type VI secretion protein | TssF |
25 | CFSAN001921_16065 | 3260140..3261135 [+], 996 | 525839284 | SPI-6 associated protein | TssG |
26 | CFSAN001921_16070 | 3261146..3262201 [+], 1056 | 525839285 | hypothetical protein | TssA |
27 | CFSAN001921_16080 | 3262733..3263473 [-], 741 | 525839286 | DNA polymerase III subunit epsilon | |
28 | CFSAN001921_16085 | 3263528..3263995 [+], 468 | 525839287 | ribonuclease H | |
29 | CFSAN001921_16090 | 3263992..3264714 [-], 723 | 525839288 | hypothetical protein | |
30 | CFSAN001921_16095 | 3264749..3265504 [+], 756 | 525839289 | hydroxyacylglutathione hydrolase | |
31 | CFSAN001921_16100 (mltD) | 3265576..3266943 [+], 1368 | 525839290 | membrane protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein